Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC6.58□□□□□ -1.36
MSX1P28360 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC6.58□□□□□ -1.36
MSX1P28360 LIX1L-AS1-203ENST00000421764 287 ntTSL 2 BASIC6.58□□□□□ -1.36
MSX1P28360 PMCHL1-202ENST00000423102 261 ntBASIC6.58□□□□□ -1.36
MSX1P28360 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC6.58□□□□□ -1.36
MSX1P28360 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.58□□□□□ -1.36
MSX1P28360 RPS3AP54-201ENST00000435535 734 ntBASIC6.58□□□□□ -1.36
MSX1P28360 RPS15AP9-201ENST00000439856 381 ntBASIC6.58□□□□□ -1.36
MSX1P28360 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC6.58□□□□□ -1.36
MSX1P28360 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
MSX1P28360 TCEA1P1-201ENST00000449716 880 ntBASIC6.58□□□□□ -1.36
MSX1P28360 CACYBPP2-201ENST00000453625 678 ntBASIC6.58□□□□□ -1.36
MSX1P28360 RNU6-1208P-201ENST00000459588 107 ntBASIC6.58□□□□□ -1.36
MSX1P28360 RPL7P15-201ENST00000461190 712 ntBASIC6.58□□□□□ -1.36
MSX1P28360 AC007547.1-201ENST00000462177 490 ntBASIC6.58□□□□□ -1.36
MSX1P28360 AC117395.2-201ENST00000463122 1128 ntBASIC6.58□□□□□ -1.36
MSX1P28360 AC090142.1-201ENST00000465776 462 ntBASIC6.58□□□□□ -1.36
MSX1P28360 RPL10P7-201ENST00000495649 625 ntBASIC6.58□□□□□ -1.36
MSX1P28360 RN7SL775P-201ENST00000498361 336 ntBASIC6.58□□□□□ -1.36
MSX1P28360 CHCHD2P7-201ENST00000508008 452 ntBASIC6.58□□□□□ -1.36
MSX1P28360 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC6.58□□□□□ -1.36
MSX1P28360 OR51A1P-201ENST00000511110 946 ntBASIC6.58□□□□□ -1.36
MSX1P28360 MTCO2P24-201ENST00000515611 426 ntBASIC6.58□□□□□ -1.36
MSX1P28360 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC6.58□□□□□ -1.36
MSX1P28360 AP003122.3-201ENST00000526316 255 ntBASIC6.58□□□□□ -1.36
MSX1P28360 AC063950.1-201ENST00000552036 308 ntBASIC6.58□□□□□ -1.36
MSX1P28360 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC6.58□□□□□ -1.36
MSX1P28360 AC091932.1-201ENST00000569381 427 ntBASIC6.58□□□□□ -1.36
MSX1P28360 MIR5186-201ENST00000577504 120 ntBASIC6.58□□□□□ -1.36
MSX1P28360 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC6.58□□□□□ -1.36
MSX1P28360 ACTR3BP1-201ENST00000605584 1247 ntBASIC6.58□□□□□ -1.36
MSX1P28360 AL022345.1-201ENST00000607292 135 ntBASIC6.58□□□□□ -1.36
MSX1P28360 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
MSX1P28360 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC6.58□□□□□ -1.36
MSX1P28360 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC6.58□□□□□ -1.36
MSX1P28360 OR7E161P-202ENST00000641994 1033 ntBASIC6.58□□□□□ -1.36
MSX1P28360 MMP10-201ENST00000279441 1758 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.58□□□□□ -1.36
MSX1P28360 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC6.58□□□□□ -1.36
MSX1P28360 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 TMBIM6-209ENST00000547798 2494 ntAPPRIS ALT2 TSL 2 BASIC6.58□□□□□ -1.36
MSX1P28360 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC6.58□□□□□ -1.36
MSX1P28360 VNN3-202ENST00000367927 1717 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
MSX1P28360 BCL2L14-211ENST00000586576 1927 ntTSL 5 BASIC6.58□□□□□ -1.36
MSX1P28360 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC6.58□□□□□ -1.36
MSX1P28360 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
MSX1P28360 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 UGT2B4-201ENST00000305107 2103 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC6.58□□□□□ -1.36
MSX1P28360 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC6.58□□□□□ -1.36
MSX1P28360 DAZ3-201ENST00000315357 3277 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 DAZ2-201ENST00000382294 3277 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
MSX1P28360 DAZ4-204ENST00000415508 3277 ntTSL 5 BASIC6.58□□□□□ -1.36
MSX1P28360 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 FBXL13-201ENST00000313221 2744 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX1P28360 SAMD3-203ENST00000437477 2028 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
MSX1P28360 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
MSX1P28360 OPALIN-202ENST00000393870 3578 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX1P28360 FGD6-205ENST00000549499 3757 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX1P28360 ZNF211-202ENST00000254182 1959 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX1P28360 FAM49B-226ENST00000523509 1968 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX1P28360 BANF2-201ENST00000246090 595 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 BX322650.1-201ENST00000332359 2143 ntBASIC6.57□□□□□ -1.36
MSX1P28360 TRIM5-202ENST00000380034 2991 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
MSX1P28360 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX1P28360 SNORA20.2-201ENST00000383922 131 ntBASIC6.57□□□□□ -1.36
MSX1P28360 MIR320B1-201ENST00000390209 79 ntBASIC6.57□□□□□ -1.36
MSX1P28360 RNU6-1055P-201ENST00000391085 107 ntBASIC6.57□□□□□ -1.36
MSX1P28360 RNY4P36-201ENST00000391116 96 ntBASIC6.57□□□□□ -1.36
MSX1P28360 CD3D-202ENST00000392884 476 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX1P28360 CISD1P1-201ENST00000393907 327 ntBASIC6.57□□□□□ -1.36
MSX1P28360 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX1P28360 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC6.57□□□□□ -1.36
MSX1P28360 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX1P28360 AL807761.1-201ENST00000417622 171 ntBASIC6.57□□□□□ -1.36
MSX1P28360 AC234782.4-201ENST00000417646 1048 ntBASIC6.57□□□□□ -1.36
MSX1P28360 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX1P28360 RPL34P3-201ENST00000421454 338 ntBASIC6.57□□□□□ -1.36
MSX1P28360 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX1P28360 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC6.57□□□□□ -1.36
MSX1P28360 LINC00570-203ENST00000437795 490 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX1P28360 AC009237.4-201ENST00000441078 238 ntBASIC6.57□□□□□ -1.36
MSX1P28360 PMS2P9-201ENST00000441237 515 ntBASIC6.57□□□□□ -1.36
MSX1P28360 AL161626.1-201ENST00000441480 490 ntBASIC6.57□□□□□ -1.36
MSX1P28360 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX1P28360 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX1P28360 PRPF38AP1-201ENST00000451976 933 ntBASIC6.57□□□□□ -1.36
MSX1P28360 CECR9-201ENST00000453421 199 ntBASIC6.57□□□□□ -1.36
MSX1P28360 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC6.57□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms