Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 Z69908.1-201ENST00000622603 247 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 RPL23AP61-201ENST00000623642 466 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 AC010608.2-201ENST00000624830 470 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC6.23□□□□□ -1.41
COL6A1P12109 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL6A1P12109 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL6A1P12109 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.23□□□□□ -1.41
COL6A1P12109 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
COL6A1P12109 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.23□□□□□ -1.41
COL6A1P12109 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL6A1P12109 ECM1P2-201ENST00000503354 1577 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.22□□□□□ -1.41
COL6A1P12109 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.22□□□□□ -1.41
COL6A1P12109 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL6A1P12109 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.22□□□□□ -1.41
COL6A1P12109 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC6.22□□□□□ -1.41
COL6A1P12109 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL6A1P12109 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL6A1P12109 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL6A1P12109 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL6A1P12109 PANDAR-201ENST00000629595 1506 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL6A1P12109 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
COL6A1P12109 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL6A1P12109 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
COL6A1P12109 MIR133B-201ENST00000362210 119 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 RNU4-4P-201ENST00000364588 130 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
COL6A1P12109 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
COL6A1P12109 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL6A1P12109 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL6A1P12109 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC6.22□□□□□ -1.41
COL6A1P12109 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC6.22□□□□□ -1.41
COL6A1P12109 PNRC2P1-201ENST00000423940 420 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 HSPE1P16-201ENST00000426640 348 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC6.22□□□□□ -1.41
COL6A1P12109 HNRNPA3P4-201ENST00000427514 803 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 C8orf59P1-201ENST00000429930 303 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 FAM96AP1-201ENST00000430879 482 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 TRY2P-201ENST00000448860 689 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC6.22□□□□□ -1.41
COL6A1P12109 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC6.22□□□□□ -1.41
COL6A1P12109 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC6.22□□□□□ -1.41
COL6A1P12109 ANKRD26P4-201ENST00000455755 950 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 AC004129.2-201ENST00000457229 287 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 RPS3AP41-201ENST00000462701 778 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 RPL17P2-201ENST00000491913 451 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL6A1P12109 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC6.22□□□□□ -1.41
COL6A1P12109 RNA5SP303-201ENST00000516192 130 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 RN7SKP99-201ENST00000517028 307 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC6.22□□□□□ -1.41
COL6A1P12109 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC6.22□□□□□ -1.41
COL6A1P12109 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC6.22□□□□□ -1.41
COL6A1P12109 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC6.22□□□□□ -1.41
COL6A1P12109 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC6.22□□□□□ -1.41
COL6A1P12109 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC6.22□□□□□ -1.41
COL6A1P12109 AC002400.1-201ENST00000569310 726 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 CASC22-201ENST00000569713 386 ntTSL 5 BASIC6.22□□□□□ -1.41
COL6A1P12109 MIR3934-201ENST00000579806 107 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 MIR4801-201ENST00000582704 82 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC6.22□□□□□ -1.41
COL6A1P12109 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC6.22□□□□□ -1.41
COL6A1P12109 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.22□□□□□ -1.41
COL6A1P12109 AC006115.2-201ENST00000596823 202 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 AP002906.1-201ENST00000603405 233 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 AC005377.1-201ENST00000605126 456 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC6.22□□□□□ -1.41
COL6A1P12109 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC6.22□□□□□ -1.41
COL6A1P12109 AC025574.2-201ENST00000615621 514 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 AC073534.2-201ENST00000620377 381 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 AC091931.1-201ENST00000623488 728 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 AC090582.1-201ENST00000636321 199 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 AC119674.1-212ENST00000641155 993 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL6A1P12109 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC6.22□□□□□ -1.41
COL6A1P12109 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC6.22□□□□□ -1.41
COL6A1P12109 AC019072.1-201ENST00000604535 1551 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL6A1P12109 AL355834.1-201ENST00000556602 3965 ntBASIC6.22□□□□□ -1.41
COL6A1P12109 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.22□□□□□ -1.41
COL6A1P12109 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL6A1P12109 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL6A1P12109 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.22□□□□□ -1.41
COL6A1P12109 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.22□□□□□ -1.41
COL6A1P12109 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.21□□□□□ -1.41
COL6A1P12109 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.41
COL6A1P12109 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
COL6A1P12109 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
COL6A1P12109 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC6.21□□□□□ -1.41
COL6A1P12109 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
COL6A1P12109 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL6A1P12109 RNU6-666P-201ENST00000363499 107 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 RNVU1-6-201ENST00000364688 164 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL6A1P12109 RNU6-83P-201ENST00000384568 112 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
COL6A1P12109 RNU6ATAC7P-201ENST00000408111 127 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 LINC01881-201ENST00000416103 412 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 536.3 ms