Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AC007996.1-201ENST00000620414 2821 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 RNU6-1339P-201ENST00000363574 91 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 SNORA62.2-201ENST00000364672 152 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 RNU1-43P-201ENST00000365052 165 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 RNU1-149P-201ENST00000390870 161 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 PTP4A1P5-201ENST00000420305 455 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 BX119904.4-201ENST00000424402 301 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 VN1R108P-201ENST00000431580 830 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AC009263.1-201ENST00000441193 1239 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 CEACAMP7-201ENST00000444105 496 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 DNAJC19P8-201ENST00000452887 259 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 SNRPCP2-201ENST00000504370 475 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AC016839.1-201ENST00000578162 867 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AC110760.3-201ENST00000598794 467 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AC146944.4-201ENST00000602697 718 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AC069307.1-201ENST00000602820 447 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 VIS1.1-201ENST00000610517 203 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AL157770.1-201ENST00000623049 439 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AC103706.2-201ENST00000638080 240 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 OR8B1P-202ENST00000641132 1178 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 MFSD8-245ENST00000641743 948 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.65□□□□□ -1.51
TDP1Q9NUW8 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.65□□□□□ -1.51
TDP1Q9NUW8 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
TDP1Q9NUW8 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.65□□□□□ -1.51
TDP1Q9NUW8 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
TDP1Q9NUW8 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.65□□□□□ -1.51
TDP1Q9NUW8 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
TDP1Q9NUW8 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
TDP1Q9NUW8 CASC19-206ENST00000641028 1430 ntBASIC5.65□□□□□ -1.51
TDP1Q9NUW8 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
TDP1Q9NUW8 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 RNU4-72P-201ENST00000410754 173 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 RPL12P17-201ENST00000432393 498 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AL389915.2-201ENST00000454576 441 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 ANKRD26P4-201ENST00000455755 950 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 RNU7-27P-201ENST00000459281 62 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AC011979.1-201ENST00000472300 483 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 RPL7AP6-201ENST00000477943 801 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 NDUFB4P12-201ENST00000513465 390 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AC023632.1-201ENST00000518463 375 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 C1GALT1P3-201ENST00000522049 819 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AC010306.1-201ENST00000523223 1117 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AC008015.1-201ENST00000555505 465 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 RPL10P14-201ENST00000565265 298 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 MIR3691-201ENST00000578066 90 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 RN7SL708P-201ENST00000580952 299 ntBASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms