Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 MT-TP-201ENST00000387461 68 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 COX6CP17-201ENST00000421389 185 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 SDR42E1P3-201ENST00000438345 502 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC010733.1-201ENST00000451515 401 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC107015.1-201ENST00000466902 747 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC092905.1-201ENST00000467527 949 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC116562.1-201ENST00000485355 781 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 RN7SL441P-201ENST00000492388 296 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 RPL23AP73-201ENST00000492507 471 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 NIFKP7-201ENST00000503365 834 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 MTCO1P31-201ENST00000506355 492 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC010468.3-201ENST00000508225 458 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 IGLVIV-66-1-201ENST00000521832 460 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 C1GALT1P3-201ENST00000522049 819 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 SOX5P1-201ENST00000524155 1127 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC012557.1-201ENST00000607115 611 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AP006248.3-201ENST00000623580 594 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 RLIMP2-201ENST00000427891 1563 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 ECM1P2-201ENST00000503354 1577 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AL353692.2-201ENST00000407054 335 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AL121878.1-201ENST00000418638 859 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AC013429.2-201ENST00000418798 781 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AC009480.2-201ENST00000422916 432 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 NRBF2P3-201ENST00000432731 865 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 CYCSP24-201ENST00000445119 316 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AC078857.1-201ENST00000469870 667 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 NPM1P17-201ENST00000479221 602 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 MYL12BP2-201ENST00000503948 512 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 HPRT1P1-201ENST00000509498 657 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AC092451.2-201ENST00000538746 658 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AC087888.1-201ENST00000550884 1254 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AC021483.2-201ENST00000567415 758 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AC034236.3-201ENST00000605999 461 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AC245389.2-201ENST00000616023 576 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 AC242843.1-201ENST00000618702 573 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 FRG1EP-201ENST00000634469 770 ntBASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC3Q9BQI4 NEAT1-202ENST00000501122 22743 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms