Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.54□□□□□ -1.68
SOX3P41225 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.54□□□□□ -1.68
SOX3P41225 TMBIM7P-201ENST00000418074 855 ntBASIC4.54□□□□□ -1.68
SOX3P41225 AC234781.4-201ENST00000419384 244 ntBASIC4.54□□□□□ -1.68
SOX3P41225 MTND4LP13-201ENST00000425022 298 ntBASIC4.54□□□□□ -1.68
SOX3P41225 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.54□□□□□ -1.68
SOX3P41225 AL049745.1-201ENST00000433953 286 ntBASIC4.54□□□□□ -1.68
SOX3P41225 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.54□□□□□ -1.68
SOX3P41225 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.54□□□□□ -1.68
SOX3P41225 EIF2S2P5-201ENST00000457635 968 ntBASIC4.54□□□□□ -1.68
SOX3P41225 AC063943.1-201ENST00000465434 453 ntBASIC4.54□□□□□ -1.68
SOX3P41225 AC116562.1-201ENST00000485355 781 ntBASIC4.54□□□□□ -1.68
SOX3P41225 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.54□□□□□ -1.68
SOX3P41225 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.54□□□□□ -1.68
SOX3P41225 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC4.54□□□□□ -1.68
SOX3P41225 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC4.54□□□□□ -1.68
SOX3P41225 AC113192.3-201ENST00000529152 742 ntBASIC4.54□□□□□ -1.68
SOX3P41225 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.54□□□□□ -1.68
SOX3P41225 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.54□□□□□ -1.68
SOX3P41225 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
SOX3P41225 BGLT3-201ENST00000564523 994 ntBASIC4.54□□□□□ -1.68
SOX3P41225 DNAJC19P3-201ENST00000594491 331 ntBASIC4.54□□□□□ -1.68
SOX3P41225 AC020910.3-201ENST00000603701 874 ntBASIC4.54□□□□□ -1.68
SOX3P41225 AC120053.1-201ENST00000607706 736 ntBASIC4.54□□□□□ -1.68
SOX3P41225 AL049794.2-201ENST00000616301 365 ntBASIC4.54□□□□□ -1.68
SOX3P41225 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.54□□□□□ -1.68
SOX3P41225 AL592494.2-201ENST00000425455 1548 ntBASIC4.54□□□□□ -1.68
SOX3P41225 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
SOX3P41225 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SOX3P41225 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
SOX3P41225 LINC01355-201ENST00000566551 5444 ntBASIC4.54□□□□□ -1.68
SOX3P41225 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.54□□□□□ -1.68
SOX3P41225 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
SOX3P41225 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.54□□□□□ -1.68
SOX3P41225 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SOX3P41225 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.54□□□□□ -1.68
SOX3P41225 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.54□□□□□ -1.68
SOX3P41225 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.54□□□□□ -1.68
SOX3P41225 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.54□□□□□ -1.68
SOX3P41225 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
SOX3P41225 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SOX3P41225 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC4.53□□□□□ -1.68
SOX3P41225 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.53□□□□□ -1.68
SOX3P41225 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.53□□□□□ -1.68
SOX3P41225 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SOX3P41225 SNORA73.1-201ENST00000363107 205 ntBASIC4.53□□□□□ -1.68
SOX3P41225 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SOX3P41225 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.53□□□□□ -1.68
SOX3P41225 RNA5SP296-201ENST00000410523 111 ntBASIC4.53□□□□□ -1.68
SOX3P41225 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC4.53□□□□□ -1.68
SOX3P41225 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.53□□□□□ -1.68
SOX3P41225 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.53□□□□□ -1.68
SOX3P41225 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.53□□□□□ -1.68
SOX3P41225 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.53□□□□□ -1.68
SOX3P41225 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC4.53□□□□□ -1.68
SOX3P41225 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.53□□□□□ -1.68
SOX3P41225 SLC25A18P1-201ENST00000449385 454 ntBASIC4.53□□□□□ -1.68
SOX3P41225 RHEBP2-201ENST00000450289 600 ntBASIC4.53□□□□□ -1.68
SOX3P41225 AL445433.1-201ENST00000457507 257 ntBASIC4.53□□□□□ -1.68
SOX3P41225 RPS17P2-201ENST00000461663 408 ntBASIC4.53□□□□□ -1.68
SOX3P41225 RPL5P13-201ENST00000462840 709 ntBASIC4.53□□□□□ -1.68
SOX3P41225 AC108751.2-201ENST00000469993 231 ntBASIC4.53□□□□□ -1.68
SOX3P41225 AC091544.1-201ENST00000484702 348 ntBASIC4.53□□□□□ -1.68
SOX3P41225 RPS23P1-201ENST00000491662 432 ntBASIC4.53□□□□□ -1.68
SOX3P41225 AC020890.1-201ENST00000491837 504 ntBASIC4.53□□□□□ -1.68
SOX3P41225 AC016550.1-201ENST00000505348 785 ntBASIC4.53□□□□□ -1.68
SOX3P41225 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SOX3P41225 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.53□□□□□ -1.68
SOX3P41225 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC4.53□□□□□ -1.68
SOX3P41225 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.53□□□□□ -1.68
SOX3P41225 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC4.53□□□□□ -1.68
SOX3P41225 EIF4A2P5-201ENST00000529914 499 ntBASIC4.53□□□□□ -1.68
SOX3P41225 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SOX3P41225 AC116553.2-201ENST00000564203 463 ntBASIC4.53□□□□□ -1.68
SOX3P41225 AC233702.9-201ENST00000581528 203 ntBASIC4.53□□□□□ -1.68
SOX3P41225 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.53□□□□□ -1.68
SOX3P41225 AC015911.5-201ENST00000587076 451 ntBASIC4.53□□□□□ -1.68
SOX3P41225 SNX6P1-201ENST00000601728 1224 ntBASIC4.53□□□□□ -1.68
SOX3P41225 RPL23AP61-201ENST00000623642 466 ntBASIC4.53□□□□□ -1.68
SOX3P41225 NEAT1-202ENST00000501122 22743 ntBASIC4.53□□□□□ -1.68
SOX3P41225 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SOX3P41225 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SOX3P41225 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC4.53□□□□□ -1.68
SOX3P41225 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC4.53□□□□□ -1.68
SOX3P41225 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SOX3P41225 AC083843.3-201ENST00000623679 2186 ntBASIC4.53□□□□□ -1.68
SOX3P41225 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
SOX3P41225 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
SOX3P41225 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.52□□□□□ -1.69
SOX3P41225 SPATA2P1-201ENST00000431223 2055 ntBASIC4.52□□□□□ -1.69
SOX3P41225 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.52□□□□□ -1.69
SOX3P41225 RNA5SP191-201ENST00000362585 102 ntBASIC4.52□□□□□ -1.69
SOX3P41225 RNU6-792P-201ENST00000363490 107 ntBASIC4.52□□□□□ -1.69
SOX3P41225 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
SOX3P41225 RNU6-31P-201ENST00000384388 108 ntBASIC4.52□□□□□ -1.69
SOX3P41225 RNU6-1263P-201ENST00000384601 106 ntBASIC4.52□□□□□ -1.69
SOX3P41225 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SOX3P41225 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SOX3P41225 AL357515.1-201ENST00000402967 542 ntBASIC4.52□□□□□ -1.69
SOX3P41225 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms