Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA9P31269 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
HOXA9P31269 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
HOXA9P31269 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA9P31269 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.83□□□□□ -1.64
HOXA9P31269 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC4.83□□□□□ -1.64
HOXA9P31269 AP001642.1-201ENST00000624727 2117 ntBASIC4.82□□□□□ -1.64
HOXA9P31269 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
HOXA9P31269 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA9P31269 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
HOXA9P31269 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA9P31269 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA9P31269 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA9P31269 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA9P31269 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXA9P31269 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA9P31269 OR2AH1P-201ENST00000425717 928 ntBASIC4.82□□□□□ -1.64
HOXA9P31269 RPS29P17-201ENST00000430795 166 ntBASIC4.82□□□□□ -1.64
HOXA9P31269 AC011998.1-201ENST00000433403 117 ntBASIC4.82□□□□□ -1.64
HOXA9P31269 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA9P31269 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXA9P31269 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXA9P31269 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA9P31269 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.82□□□□□ -1.64
HOXA9P31269 AL109766.1-201ENST00000555080 552 ntBASIC4.82□□□□□ -1.64
HOXA9P31269 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.82□□□□□ -1.64
HOXA9P31269 AC069366.1-201ENST00000583159 838 ntBASIC4.82□□□□□ -1.64
HOXA9P31269 MIR3138-201ENST00000585238 82 ntBASIC4.82□□□□□ -1.64
HOXA9P31269 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXA9P31269 AL020997.2-201ENST00000602607 184 ntBASIC4.82□□□□□ -1.64
HOXA9P31269 AL158062.1-201ENST00000619632 745 ntBASIC4.82□□□□□ -1.64
HOXA9P31269 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA9P31269 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA9P31269 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
HOXA9P31269 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA9P31269 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA9P31269 AL136164.3-201ENST00000624429 3978 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA9P31269 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA9P31269 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA9P31269 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA9P31269 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA9P31269 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA9P31269 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
HOXA9P31269 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
HOXA9P31269 RN7SKP224-201ENST00000364140 325 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 RNA5SP479-201ENST00000364858 117 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 MIR659-201ENST00000384963 97 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 MIR1193-201ENST00000408109 78 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA9P31269 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA9P31269 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA9P31269 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA9P31269 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA9P31269 RGS17P1-201ENST00000423358 553 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA9P31269 TMX2P1-201ENST00000436507 708 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA9P31269 NPM1P39-201ENST00000449818 867 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 RPL21P126-201ENST00000470049 478 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 NPM1P29-201ENST00000483112 803 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 NPM1P6-201ENST00000521088 871 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA9P31269 AC018442.3-201ENST00000523025 183 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 HNRNPRP2-201ENST00000528421 743 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXA9P31269 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA9P31269 RN7SL435P-201ENST00000584418 282 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 AC010857.1-201ENST00000606398 594 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 AL137246.1-201ENST00000607072 977 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 AC016252.1-201ENST00000609721 474 ntBASIC4.81□□□□□ -1.64
HOXA9P31269 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
HOXA9P31269 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
HOXA9P31269 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA9P31269 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXA9P31269 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA9P31269 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA9P31269 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
HOXA9P31269 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA9P31269 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA9P31269 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXA9P31269 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
HOXA9P31269 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA9P31269 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
HOXA9P31269 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA9P31269 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA9P31269 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA9P31269 AL672167.2-201ENST00000377164 879 ntBASIC4.8□□□□□ -1.64
HOXA9P31269 SNORA70C-201ENST00000384538 135 ntBASIC4.8□□□□□ -1.64
HOXA9P31269 AL359643.1-201ENST00000404109 423 ntBASIC4.8□□□□□ -1.64
HOXA9P31269 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXA9P31269 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXA9P31269 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXA9P31269 ACTR3P2-201ENST00000439585 1257 ntBASIC4.8□□□□□ -1.64
HOXA9P31269 RPL7P33-201ENST00000444159 742 ntBASIC4.8□□□□□ -1.64
HOXA9P31269 CYCSP34-201ENST00000458172 304 ntBASIC4.8□□□□□ -1.64
HOXA9P31269 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.8□□□□□ -1.64
HOXA9P31269 RN7SL98P-201ENST00000462271 300 ntBASIC4.8□□□□□ -1.64
HOXA9P31269 AC020898.1-201ENST00000474167 787 ntBASIC4.8□□□□□ -1.64
HOXA9P31269 RN7SL41P-201ENST00000476144 297 ntBASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms