Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL139247.1-201ENST00000422768 325 ntBASIC4.41□□□□□ -1.7
COL6A3P12111 AL121890.1-201ENST00000435457 205 ntBASIC4.41□□□□□ -1.7
COL6A3P12111 AL831737.1-201ENST00000441288 271 ntBASIC4.41□□□□□ -1.7
COL6A3P12111 AF213884.1-201ENST00000488102 463 ntBASIC4.41□□□□□ -1.7
COL6A3P12111 AC097462.2-201ENST00000504623 481 ntBASIC4.41□□□□□ -1.7
COL6A3P12111 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
COL6A3P12111 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
COL6A3P12111 CCDC162P-202ENST00000368966 6751 ntBASIC4.4□□□□□ -1.7
COL6A3P12111 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
COL6A3P12111 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.4□□□□□ -1.7
COL6A3P12111 AP005435.3-201ENST00000531260 3198 ntBASIC4.4□□□□□ -1.7
COL6A3P12111 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
COL6A3P12111 AC114495.1-201ENST00000441274 436 ntBASIC4.4□□□□□ -1.7
COL6A3P12111 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC4.4□□□□□ -1.7
COL6A3P12111 AC106707.2-201ENST00000484182 374 ntBASIC4.4□□□□□ -1.7
COL6A3P12111 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC4.4□□□□□ -1.7
COL6A3P12111 DEFB109D-201ENST00000529497 240 ntBASIC4.4□□□□□ -1.7
COL6A3P12111 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.4□□□□□ -1.7
COL6A3P12111 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.4□□□□□ -1.7
COL6A3P12111 AP002360.3-201ENST00000607673 710 ntBASIC4.4□□□□□ -1.7
COL6A3P12111 MIR8057-201ENST00000620957 69 ntBASIC4.4□□□□□ -1.7
COL6A3P12111 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
COL6A3P12111 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
COL6A3P12111 CNR1-202ENST00000369499 5549 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
COL6A3P12111 STK3-216ENST00000523601 3107 ntTSL 2 BASIC4.4□□□□□ -1.7
COL6A3P12111 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC4.4□□□□□ -1.71
COL6A3P12111 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC4.4□□□□□ -1.71
COL6A3P12111 AC104260.2-201ENST00000623551 3497 ntBASIC4.4□□□□□ -1.71
COL6A3P12111 SZT2-210ENST00000634258 11045 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
COL6A3P12111 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL6A3P12111 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.4□□□□□ -1.71
COL6A3P12111 AL035079.1-201ENST00000405210 287 ntBASIC4.4□□□□□ -1.71
COL6A3P12111 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.4□□□□□ -1.71
COL6A3P12111 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.4□□□□□ -1.71
COL6A3P12111 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC4.4□□□□□ -1.71
COL6A3P12111 RPS4XP10-201ENST00000465034 731 ntBASIC4.4□□□□□ -1.71
COL6A3P12111 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.4□□□□□ -1.71
COL6A3P12111 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.4□□□□□ -1.71
COL6A3P12111 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.4□□□□□ -1.71
COL6A3P12111 TUG1_1.1-201ENST00000610654 145 ntBASIC4.4□□□□□ -1.71
COL6A3P12111 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.4□□□□□ -1.71
COL6A3P12111 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.4□□□□□ -1.71
COL6A3P12111 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL6A3P12111 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL6A3P12111 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL6A3P12111 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
COL6A3P12111 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 RYBP-201ENST00000477973 7215 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
COL6A3P12111 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 COX6B1P6-201ENST00000522347 255 ntBASIC4.39□□□□□ -1.71
COL6A3P12111 AC087477.6-201ENST00000559595 843 ntBASIC4.39□□□□□ -1.71
COL6A3P12111 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC4.39□□□□□ -1.71
COL6A3P12111 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.39□□□□□ -1.71
COL6A3P12111 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 SNX18P3-202ENST00000565670 1750 ntBASIC4.39□□□□□ -1.71
COL6A3P12111 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
COL6A3P12111 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
COL6A3P12111 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.39□□□□□ -1.71
COL6A3P12111 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 RNU1-33P-201ENST00000364249 162 ntBASIC4.39□□□□□ -1.71
COL6A3P12111 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.39□□□□□ -1.71
COL6A3P12111 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 AC007159.1-201ENST00000566529 4706 ntBASIC4.39□□□□□ -1.71
COL6A3P12111 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 AC010733.2-201ENST00000589496 5702 ntBASIC4.39□□□□□ -1.71
COL6A3P12111 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
COL6A3P12111 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.39□□□□□ -1.71
COL6A3P12111 RPL23AP81-201ENST00000455252 467 ntBASIC4.39□□□□□ -1.71
COL6A3P12111 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A3P12111 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.39□□□□□ -1.71
COL6A3P12111 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A3P12111 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A3P12111 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A3P12111 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
COL6A3P12111 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A3P12111 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC4.38□□□□□ -1.71
COL6A3P12111 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A3P12111 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A3P12111 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A3P12111 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.38□□□□□ -1.71
COL6A3P12111 AC017083.1-201ENST00000428093 483 ntBASIC4.38□□□□□ -1.71
COL6A3P12111 AL390879.1-201ENST00000439143 386 ntBASIC4.38□□□□□ -1.71
COL6A3P12111 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.38□□□□□ -1.71
COL6A3P12111 AC112206.1-201ENST00000468416 477 ntBASIC4.38□□□□□ -1.71
COL6A3P12111 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.38□□□□□ -1.71
COL6A3P12111 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.38□□□□□ -1.71
COL6A3P12111 FKBP1BP1-201ENST00000553366 325 ntBASIC4.38□□□□□ -1.71
COL6A3P12111 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.38□□□□□ -1.71
COL6A3P12111 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms