Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC055839.1-201ENST00000634467 498 ntBASIC4.21□□□□□ -1.74
VPS13AQ96RL7 MFN1-205ENST00000471841 5224 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 AC004158.1-201ENST00000564508 4319 ntBASIC4.21□□□□□ -1.74
VPS13AQ96RL7 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 VN1R51P-201ENST00000411675 945 ntBASIC4.2□□□□□ -1.74
VPS13AQ96RL7 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AC027455.1-201ENST00000574104 594 ntBASIC4.2□□□□□ -1.74
VPS13AQ96RL7 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 HYDIN2-203ENST00000614586 13885 ntBASIC4.2□□□□□ -1.74
VPS13AQ96RL7 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AL158827.1-201ENST00000416300 391 ntBASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 BX276092.6-201ENST00000430476 250 ntBASIC4.2□□□□□ -1.74
VPS13AQ96RL7 BX276092.8-201ENST00000455722 250 ntBASIC4.2□□□□□ -1.74
VPS13AQ96RL7 RPL37P3-201ENST00000456825 293 ntBASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AF213884.1-201ENST00000488102 463 ntBASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AC011816.2-201ENST00000607089 556 ntBASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AC073136.1-201ENST00000449426 2884 ntBASIC4.2□□□□□ -1.74
VPS13AQ96RL7 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AC245052.5-201ENST00000416320 649 ntBASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AC013429.2-201ENST00000418798 781 ntBASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AL031985.2-201ENST00000600955 480 ntBASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AC007786.3-201ENST00000615154 596 ntBASIC4.2□□□□□ -1.74
VPS13AQ96RL7 AP001002.2-201ENST00000625137 386 ntBASIC4.2□□□□□ -1.74
VPS13AQ96RL7 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.2□□□□□ -1.74
VPS13AQ96RL7 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 OR11H4-201ENST00000315409 1082 ntBASIC4.19□□□□□ -1.74
VPS13AQ96RL7 RPS20P14-201ENST00000412545 360 ntBASIC4.19□□□□□ -1.74
VPS13AQ96RL7 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 MTND6P5-201ENST00000448266 512 ntBASIC4.19□□□□□ -1.74
VPS13AQ96RL7 RPL23AP81-201ENST00000455252 467 ntBASIC4.19□□□□□ -1.74
VPS13AQ96RL7 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 AC087477.6-201ENST00000559595 843 ntBASIC4.19□□□□□ -1.74
VPS13AQ96RL7 AC037471.2-201ENST00000564941 598 ntBASIC4.19□□□□□ -1.74
VPS13AQ96RL7 AC090312.1-201ENST00000580637 348 ntBASIC4.19□□□□□ -1.74
VPS13AQ96RL7 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 PRNCR1-201ENST00000635449 12727 ntBASIC4.19□□□□□ -1.74
VPS13AQ96RL7 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 AC025857.2-201ENST00000602711 238 ntBASIC4.19□□□□□ -1.74
VPS13AQ96RL7 AC026367.3-201ENST00000619032 590 ntBASIC4.19□□□□□ -1.74
VPS13AQ96RL7 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 ZEB2-232ENST00000636026 5172 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 AL445487.1-201ENST00000415694 1580 ntBASIC4.19□□□□□ -1.74
VPS13AQ96RL7 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS13AQ96RL7 AL603750.1-201ENST00000624216 1717 ntBASIC4.19□□□□□ -1.74
VPS13AQ96RL7 AL390879.2-203ENST00000426943 1121 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 MTND2P40-201ENST00000436718 841 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 AC114495.1-201ENST00000441274 436 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 AC016559.2-201ENST00000510759 359 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 AC093853.1-201ENST00000515689 483 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 AC079880.2-201ENST00000603790 1213 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 AC092354.2-201ENST00000607786 514 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms