Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.07□□□□□ -1.92
PRKDCP78527 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC3.07□□□□□ -1.92
PRKDCP78527 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 CBX1P3-201ENST00000413296 527 ntBASIC3.07□□□□□ -1.92
PRKDCP78527 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC3.07□□□□□ -1.92
PRKDCP78527 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC3.07□□□□□ -1.92
PRKDCP78527 OR9M1P-201ENST00000459641 921 ntBASIC3.07□□□□□ -1.92
PRKDCP78527 AF213884.1-201ENST00000488102 463 ntBASIC3.07□□□□□ -1.92
PRKDCP78527 AL139099.1-201ENST00000497398 403 ntBASIC3.07□□□□□ -1.92
PRKDCP78527 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.07□□□□□ -1.92
PRKDCP78527 CLASP1-215ENST00000541377 7909 ntTSL 5 BASIC3.07□□□□□ -1.92
PRKDCP78527 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC3.07□□□□□ -1.92
PRKDCP78527 MTCO1P12-201ENST00000414273 1543 ntBASIC3.07□□□□□ -1.92
PRKDCP78527 AC004944.1-201ENST00000517807 3059 ntBASIC3.07□□□□□ -1.92
PRKDCP78527 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 U3.26-201ENST00000391236 204 ntBASIC3.07□□□□□ -1.92
PRKDCP78527 RNU4-6P-201ENST00000410804 122 ntBASIC3.07□□□□□ -1.92
PRKDCP78527 RPL21P43-201ENST00000425440 472 ntBASIC3.07□□□□□ -1.92
PRKDCP78527 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.07□□□□□ -1.92
PRKDCP78527 EIF4A2P2-201ENST00000455776 1070 ntBASIC3.07□□□□□ -1.92
PRKDCP78527 UBE2CP3-201ENST00000502715 450 ntBASIC3.07□□□□□ -1.92
PRKDCP78527 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.07□□□□□ -1.92
PRKDCP78527 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.07□□□□□ -1.92
PRKDCP78527 NLGN4Y-203ENST00000382868 5338 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC3.07□□□□□ -1.92
PRKDCP78527 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.07□□□□□ -1.92
PRKDCP78527 ZCCHC11-201ENST00000257177 5743 ntAPPRIS P4 TSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 CA5A-201ENST00000309893 7567 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 MAP2-207ENST00000447185 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 ZNF555-201ENST00000334241 8557 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 KALRN-202ENST00000291478 10888 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC3.07□□□□□ -1.92
PRKDCP78527 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
PRKDCP78527 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.07□□□□□ -1.92
PRKDCP78527 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC3.07□□□□□ -1.92
PRKDCP78527 AL731532.1-201ENST00000623972 4236 ntBASIC3.07□□□□□ -1.92
PRKDCP78527 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC3.07□□□□□ -1.92
PRKDCP78527 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 SPHKAP-202ENST00000392056 6917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
PRKDCP78527 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 MRPL35P4-201ENST00000453682 566 ntBASIC3.07□□□□□ -1.92
PRKDCP78527 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.07□□□□□ -1.92
PRKDCP78527 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC3.07□□□□□ -1.92
PRKDCP78527 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
PRKDCP78527 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
PRKDCP78527 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.06□□□□□ -1.92
PRKDCP78527 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.06□□□□□ -1.92
PRKDCP78527 NBPF9-202ENST00000584027 5034 ntAPPRIS P2 TSL 5 BASIC3.06□□□□□ -1.92
PRKDCP78527 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.06□□□□□ -1.92
PRKDCP78527 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
PRKDCP78527 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
PRKDCP78527 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
PRKDCP78527 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
PRKDCP78527 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC3.06□□□□□ -1.92
PRKDCP78527 SNORA57.3-201ENST00000411095 141 ntBASIC3.06□□□□□ -1.92
PRKDCP78527 AL139247.1-201ENST00000422768 325 ntBASIC3.06□□□□□ -1.92
PRKDCP78527 AC005300.1-201ENST00000428401 373 ntBASIC3.06□□□□□ -1.92
PRKDCP78527 RN7SL601P-201ENST00000471221 293 ntBASIC3.06□□□□□ -1.92
PRKDCP78527 FTH1P24-201ENST00000503502 462 ntBASIC3.06□□□□□ -1.92
PRKDCP78527 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.06□□□□□ -1.92
PRKDCP78527 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.06□□□□□ -1.92
PRKDCP78527 AC118465.1-201ENST00000513820 1271 ntBASIC3.06□□□□□ -1.92
PRKDCP78527 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC3.06□□□□□ -1.92
PRKDCP78527 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC3.06□□□□□ -1.92
PRKDCP78527 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
PRKDCP78527 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC3.06□□□□□ -1.92
PRKDCP78527 AC007159.1-201ENST00000566529 4706 ntBASIC3.06□□□□□ -1.92
PRKDCP78527 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC3.06□□□□□ -1.92
PRKDCP78527 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
PRKDCP78527 F5-201ENST00000367796 7039 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
PRKDCP78527 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
PRKDCP78527 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.06□□□□□ -1.92
PRKDCP78527 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
PRKDCP78527 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC3.06□□□□□ -1.92
PRKDCP78527 OR6K3-202ENST00000368146 996 ntBASIC3.06□□□□□ -1.92
PRKDCP78527 AC110792.1-201ENST00000491826 472 ntBASIC3.06□□□□□ -1.92
PRKDCP78527 AC010201.1-201ENST00000605051 540 ntBASIC3.06□□□□□ -1.92
PRKDCP78527 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC3.06□□□□□ -1.92
PRKDCP78527 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.06□□□□□ -1.92
PRKDCP78527 LINC01808-202ENST00000641680 1116 ntBASIC3.06□□□□□ -1.92
PRKDCP78527 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
PRKDCP78527 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
PRKDCP78527 ITSN2-213ENST00000622089 5805 ntTSL 5 BASIC3.06□□□□□ -1.92
PRKDCP78527 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.06□□□□□ -1.92
PRKDCP78527 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
PRKDCP78527 ZC3H13-202ENST00000282007 6412 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
PRKDCP78527 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
PRKDCP78527 MR1-209ENST00000617803 7584 ntTSL 5 BASIC3.06□□□□□ -1.92
PRKDCP78527 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms