Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS4BO75351 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.48□□□□□ -1.53
VPS4BO75351 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.48□□□□□ -1.53
VPS4BO75351 AL513185.3-201ENST00000433335 1300 ntBASIC5.48□□□□□ -1.53
VPS4BO75351 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.48□□□□□ -1.53
VPS4BO75351 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4BO75351 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS4BO75351 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4BO75351 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4BO75351 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS4BO75351 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4BO75351 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4BO75351 PDZK1P1-202ENST00000425209 1350 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
VPS4BO75351 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
VPS4BO75351 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4BO75351 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4BO75351 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4BO75351 RNA5SP326-201ENST00000363209 110 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 SNORD116.1-201ENST00000365628 92 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4BO75351 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 Y_RNA.625-201ENST00000411256 107 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS4BO75351 LUZP4P1-201ENST00000415420 344 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 AC234781.4-201ENST00000419384 244 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS4BO75351 NIPA2P1-201ENST00000426223 976 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 DPY19L1P2-201ENST00000426647 915 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS4BO75351 YWHAEP5-201ENST00000431545 765 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 AC073465.2-201ENST00000440938 498 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4BO75351 IGBP1P3-201ENST00000447449 1000 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS4BO75351 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS4BO75351 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS4BO75351 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.47□□□□□ -1.53
VPS4BO75351 RN7SL57P-201ENST00000493687 290 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS4BO75351 AC113347.3-201ENST00000509113 148 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC5.47□□□□□ -1.53
VPS4BO75351 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS4BO75351 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4BO75351 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4BO75351 AC139365.2-201ENST00000517972 253 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 AC020937.1-201ENST00000519677 1013 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC5.47□□□□□ -1.53
VPS4BO75351 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS4BO75351 AC083923.1-201ENST00000523708 376 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4BO75351 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS4BO75351 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS4BO75351 AC004825.1-201ENST00000555068 586 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS4BO75351 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4BO75351 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS4BO75351 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4BO75351 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4BO75351 AC146944.4-201ENST00000602697 718 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 AL109653.1-201ENST00000603091 248 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 DPRXP5-201ENST00000604662 539 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 AC010632.3-201ENST00000611377 369 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4BO75351 uc_338.7-201ENST00000621834 124 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 AC131159.1-201ENST00000621854 213 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS4BO75351 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4BO75351 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4BO75351 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.47□□□□□ -1.53
VPS4BO75351 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4BO75351 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4BO75351 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.47□□□□□ -1.53
VPS4BO75351 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4BO75351 AC008079.2-201ENST00000623543 20396 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
VPS4BO75351 AL590763.1-201ENST00000398297 1545 ntBASIC5.47□□□□□ -1.53
VPS4BO75351 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
VPS4BO75351 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4BO75351 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4BO75351 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
VPS4BO75351 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
VPS4BO75351 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.53
VPS4BO75351 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
VPS4BO75351 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.46□□□□□ -1.53
VPS4BO75351 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
VPS4BO75351 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC5.46□□□□□ -1.54
VPS4BO75351 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4BO75351 AC002525.1-201ENST00000624392 1622 ntBASIC5.46□□□□□ -1.54
VPS4BO75351 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4BO75351 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4BO75351 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4BO75351 RNU6-532P-201ENST00000384318 107 ntBASIC5.46□□□□□ -1.54
VPS4BO75351 RNA5SP187-201ENST00000384400 119 ntBASIC5.46□□□□□ -1.54
VPS4BO75351 PEX12P1-201ENST00000400284 1048 ntBASIC5.46□□□□□ -1.54
VPS4BO75351 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC5.46□□□□□ -1.54
VPS4BO75351 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC5.46□□□□□ -1.54
VPS4BO75351 AL079342.2-201ENST00000403367 482 ntBASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms