Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 KRT8P9-201ENST00000558927 1449 ntBASIC23.66■■□□□ 1.38
RPAP1Q9BWH6 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RPAP1Q9BWH6 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RPAP1Q9BWH6 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RPAP1Q9BWH6 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RPAP1Q9BWH6 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 P4HB-223ENST00000576390 439 ntTSL 4 BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 KRT16P1-201ENST00000399124 1418 ntBASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 TFP1-202ENST00000475455 1573 ntBASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RPAP1Q9BWH6 AL158211.5-201ENST00000623583 2518 ntBASIC23.64■■□□□ 1.38
RPAP1Q9BWH6 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
RPAP1Q9BWH6 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
RPAP1Q9BWH6 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC23.64■■□□□ 1.37
RPAP1Q9BWH6 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
RPAP1Q9BWH6 AC009237.14-201ENST00000609975 1594 ntBASIC23.64■■□□□ 1.37
RPAP1Q9BWH6 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
RPAP1Q9BWH6 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC23.64■■□□□ 1.37
RPAP1Q9BWH6 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
RPAP1Q9BWH6 AC018553.1-201ENST00000616682 1458 ntBASIC23.64■■□□□ 1.37
RPAP1Q9BWH6 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
RPAP1Q9BWH6 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC23.64■■□□□ 1.37
RPAP1Q9BWH6 C1QL1P1-201ENST00000568105 661 ntBASIC23.64■■□□□ 1.37
RPAP1Q9BWH6 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC23.64■■□□□ 1.37
RPAP1Q9BWH6 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
RPAP1Q9BWH6 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
RPAP1Q9BWH6 AC092865.7-201ENST00000641832 219 ntBASIC23.64■■□□□ 1.37
RPAP1Q9BWH6 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC23.63■■□□□ 1.37
RPAP1Q9BWH6 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
RPAP1Q9BWH6 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC23.63■■□□□ 1.37
RPAP1Q9BWH6 GOLGA2P11-201ENST00000562660 1621 ntBASIC23.63■■□□□ 1.37
RPAP1Q9BWH6 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
RPAP1Q9BWH6 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC23.63■■□□□ 1.37
RPAP1Q9BWH6 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
RPAP1Q9BWH6 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC23.63■■□□□ 1.37
RPAP1Q9BWH6 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC23.63■■□□□ 1.37
RPAP1Q9BWH6 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC23.63■■□□□ 1.37
RPAP1Q9BWH6 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC23.63■■□□□ 1.37
RPAP1Q9BWH6 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC23.63■■□□□ 1.37
RPAP1Q9BWH6 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC23.63■■□□□ 1.37
RPAP1Q9BWH6 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 AP001271.2-201ENST00000624018 1556 ntBASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 TREX1-205ENST00000625293 1783 ntBASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 AC113347.1-201ENST00000413321 391 ntBASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 FITM1-202ENST00000559294 800 ntBASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 AL445228.2-201ENST00000605589 952 ntBASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RPAP1Q9BWH6 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RPAP1Q9BWH6 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC23.61■■□□□ 1.37
RPAP1Q9BWH6 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
RPAP1Q9BWH6 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC23.61■■□□□ 1.37
RPAP1Q9BWH6 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RPAP1Q9BWH6 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
RPAP1Q9BWH6 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC23.61■■□□□ 1.37
RPAP1Q9BWH6 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
RPAP1Q9BWH6 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC23.61■■□□□ 1.37
RPAP1Q9BWH6 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
RPAP1Q9BWH6 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC23.61■■□□□ 1.37
RPAP1Q9BWH6 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC23.61■■□□□ 1.37
RPAP1Q9BWH6 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC23.61■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms