Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC24.32■■□□□ 1.48
UBE3BQ7Z3V4 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
UBE3BQ7Z3V4 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
UBE3BQ7Z3V4 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
UBE3BQ7Z3V4 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC24.32■■□□□ 1.48
UBE3BQ7Z3V4 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC24.32■■□□□ 1.48
UBE3BQ7Z3V4 AL160286.2-201ENST00000567150 934 ntBASIC24.32■■□□□ 1.48
UBE3BQ7Z3V4 SLC25A1P4-201ENST00000567977 778 ntBASIC24.32■■□□□ 1.48
UBE3BQ7Z3V4 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC24.32■■□□□ 1.48
UBE3BQ7Z3V4 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC24.32■■□□□ 1.48
UBE3BQ7Z3V4 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
UBE3BQ7Z3V4 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
UBE3BQ7Z3V4 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
UBE3BQ7Z3V4 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
UBE3BQ7Z3V4 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
UBE3BQ7Z3V4 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC24.32■■□□□ 1.48
UBE3BQ7Z3V4 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 DUT-205ENST00000558813 769 ntTSL 2 BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
UBE3BQ7Z3V4 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
UBE3BQ7Z3V4 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC24.3■■□□□ 1.48
UBE3BQ7Z3V4 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
UBE3BQ7Z3V4 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC24.3■■□□□ 1.48
UBE3BQ7Z3V4 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC24.3■■□□□ 1.48
UBE3BQ7Z3V4 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC24.3■■□□□ 1.48
UBE3BQ7Z3V4 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC24.3■■□□□ 1.48
UBE3BQ7Z3V4 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC24.3■■□□□ 1.48
UBE3BQ7Z3V4 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
UBE3BQ7Z3V4 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
UBE3BQ7Z3V4 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
UBE3BQ7Z3V4 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC24.3■■□□□ 1.48
UBE3BQ7Z3V4 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
UBE3BQ7Z3V4 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
UBE3BQ7Z3V4 PCDHAC2-203ENST00000615316 3011 ntBASIC24.29■■□□□ 1.48
UBE3BQ7Z3V4 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC24.29■■□□□ 1.48
UBE3BQ7Z3V4 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC24.29■■□□□ 1.48
UBE3BQ7Z3V4 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
UBE3BQ7Z3V4 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC24.29■■□□□ 1.48
UBE3BQ7Z3V4 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC24.29■■□□□ 1.48
UBE3BQ7Z3V4 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC24.29■■□□□ 1.48
UBE3BQ7Z3V4 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC24.29■■□□□ 1.48
UBE3BQ7Z3V4 FAM207BP-201ENST00000447172 505 ntBASIC24.29■■□□□ 1.48
UBE3BQ7Z3V4 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
UBE3BQ7Z3V4 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
UBE3BQ7Z3V4 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
UBE3BQ7Z3V4 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC24.29■■□□□ 1.48
UBE3BQ7Z3V4 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
UBE3BQ7Z3V4 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 CRAT-202ENST00000393384 973 ntTSL 2 BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 RN7SL850P-201ENST00000579959 291 ntBASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
UBE3BQ7Z3V4 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
UBE3BQ7Z3V4 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
UBE3BQ7Z3V4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
UBE3BQ7Z3V4 DERL1-203ENST00000419562 918 ntTSL 2 BASIC24.27■■□□□ 1.48
UBE3BQ7Z3V4 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC24.27■■□□□ 1.48
UBE3BQ7Z3V4 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC24.27■■□□□ 1.48
UBE3BQ7Z3V4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
UBE3BQ7Z3V4 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC24.27■■□□□ 1.48
UBE3BQ7Z3V4 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC24.27■■□□□ 1.48
UBE3BQ7Z3V4 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
UBE3BQ7Z3V4 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
UBE3BQ7Z3V4 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
UBE3BQ7Z3V4 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC24.27■■□□□ 1.48
UBE3BQ7Z3V4 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
UBE3BQ7Z3V4 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
UBE3BQ7Z3V4 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC24.26■■□□□ 1.47
UBE3BQ7Z3V4 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC24.26■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms