Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH1Q08174 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH1Q08174 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH1Q08174 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.77■□□□□ 0.6
PCDH1Q08174 AC026366.1-201ENST00000488803 879 ntBASIC18.77■□□□□ 0.6
PCDH1Q08174 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH1Q08174 AP003097.1-201ENST00000530657 1135 ntBASIC18.77■□□□□ 0.6
PCDH1Q08174 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.77■□□□□ 0.6
PCDH1Q08174 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH1Q08174 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
PCDH1Q08174 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH1Q08174 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.77■□□□□ 0.6
PCDH1Q08174 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH1Q08174 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
PCDH1Q08174 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.77■□□□□ 0.59
PCDH1Q08174 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PCDH1Q08174 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PCDH1Q08174 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
PCDH1Q08174 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
PCDH1Q08174 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.76■□□□□ 0.59
PCDH1Q08174 AL032819.2-201ENST00000624543 2162 ntBASIC18.76■□□□□ 0.59
PCDH1Q08174 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.76■□□□□ 0.59
PCDH1Q08174 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
PCDH1Q08174 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.76■□□□□ 0.59
PCDH1Q08174 KRT18P6-201ENST00000555540 1265 ntBASIC18.76■□□□□ 0.59
PCDH1Q08174 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.76■□□□□ 0.59
PCDH1Q08174 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.76■□□□□ 0.59
PCDH1Q08174 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.76■□□□□ 0.59
PCDH1Q08174 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
PCDH1Q08174 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
PCDH1Q08174 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
PCDH1Q08174 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PCDH1Q08174 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH1Q08174 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
PCDH1Q08174 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH1Q08174 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.75■□□□□ 0.59
PCDH1Q08174 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
PCDH1Q08174 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
PCDH1Q08174 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
PCDH1Q08174 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH1Q08174 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
PCDH1Q08174 TUBB8P6-201ENST00000436895 1288 ntBASIC18.75■□□□□ 0.59
PCDH1Q08174 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.75■□□□□ 0.59
PCDH1Q08174 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.75■□□□□ 0.59
PCDH1Q08174 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
PCDH1Q08174 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.75■□□□□ 0.59
PCDH1Q08174 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.75■□□□□ 0.59
PCDH1Q08174 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.75■□□□□ 0.59
PCDH1Q08174 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH1Q08174 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH1Q08174 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDH1Q08174 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.75■□□□□ 0.59
PCDH1Q08174 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
PCDH1Q08174 AC138932.1-201ENST00000534164 6830 ntBASIC18.74■□□□□ 0.59
PCDH1Q08174 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDH1Q08174 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDH1Q08174 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
PCDH1Q08174 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
PCDH1Q08174 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
PCDH1Q08174 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.74■□□□□ 0.59
PCDH1Q08174 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
PCDH1Q08174 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDH1Q08174 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.74■□□□□ 0.59
PCDH1Q08174 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 MTDHP1-201ENST00000605323 784 ntBASIC18.74■□□□□ 0.59
PCDH1Q08174 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH1Q08174 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH1Q08174 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms