Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL7A1Q02388 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
COL7A1Q02388 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
COL7A1Q02388 TSPY12P-201ENST00000421279 868 ntBASIC13.98□□□□□ -0.17
COL7A1Q02388 PMS2P1-201ENST00000431037 1228 ntBASIC13.98□□□□□ -0.17
COL7A1Q02388 HMGN1P19-201ENST00000436976 333 ntBASIC13.98□□□□□ -0.17
COL7A1Q02388 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL7A1Q02388 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC13.98□□□□□ -0.17
COL7A1Q02388 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL7A1Q02388 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL7A1Q02388 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL7A1Q02388 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC13.98□□□□□ -0.17
COL7A1Q02388 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL7A1Q02388 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL7A1Q02388 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL7A1Q02388 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL7A1Q02388 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL7A1Q02388 RPP21-221ENST00000428040 594 ntTSL 2 BASIC13.97□□□□□ -0.17
COL7A1Q02388 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL7A1Q02388 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC13.97□□□□□ -0.17
COL7A1Q02388 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL7A1Q02388 PLK5-205ENST00000642079 1969 ntBASIC13.97□□□□□ -0.17
COL7A1Q02388 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL7A1Q02388 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC13.97□□□□□ -0.17
COL7A1Q02388 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL7A1Q02388 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC13.97□□□□□ -0.17
COL7A1Q02388 AL160237.2-201ENST00000556165 472 ntBASIC13.97□□□□□ -0.17
COL7A1Q02388 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC13.97□□□□□ -0.17
COL7A1Q02388 NME4-212ENST00000621774 904 ntTSL 3 BASIC13.97□□□□□ -0.17
COL7A1Q02388 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
COL7A1Q02388 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC13.97□□□□□ -0.17
COL7A1Q02388 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC13.97□□□□□ -0.17
COL7A1Q02388 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
COL7A1Q02388 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC13.97□□□□□ -0.17
COL7A1Q02388 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC13.97□□□□□ -0.17
COL7A1Q02388 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL7A1Q02388 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
COL7A1Q02388 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL7A1Q02388 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL7A1Q02388 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL7A1Q02388 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC13.97□□□□□ -0.17
COL7A1Q02388 FGF14-AS2-201ENST00000606448 1074 ntBASIC13.97□□□□□ -0.17
COL7A1Q02388 AC120114.3-201ENST00000611923 658 ntBASIC13.97□□□□□ -0.17
COL7A1Q02388 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL7A1Q02388 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
COL7A1Q02388 KRT18P1-202ENST00000452408 1331 ntBASIC13.96□□□□□ -0.17
COL7A1Q02388 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL7A1Q02388 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL7A1Q02388 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL7A1Q02388 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL7A1Q02388 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL7A1Q02388 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC13.96□□□□□ -0.17
COL7A1Q02388 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL7A1Q02388 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL7A1Q02388 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL7A1Q02388 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
COL7A1Q02388 TBC1D3P2-202ENST00000577902 1649 ntBASIC13.96□□□□□ -0.18
COL7A1Q02388 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL7A1Q02388 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL7A1Q02388 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
COL7A1Q02388 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
COL7A1Q02388 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC13.96□□□□□ -0.18
COL7A1Q02388 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL7A1Q02388 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
COL7A1Q02388 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL7A1Q02388 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
COL7A1Q02388 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
COL7A1Q02388 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL7A1Q02388 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
COL7A1Q02388 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC13.96□□□□□ -0.18
COL7A1Q02388 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL7A1Q02388 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL7A1Q02388 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL7A1Q02388 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
COL7A1Q02388 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL7A1Q02388 AC092183.1-201ENST00000469884 875 ntBASIC13.95□□□□□ -0.18
COL7A1Q02388 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC13.95□□□□□ -0.18
COL7A1Q02388 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC13.95□□□□□ -0.18
COL7A1Q02388 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL7A1Q02388 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL7A1Q02388 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC13.95□□□□□ -0.18
COL7A1Q02388 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL7A1Q02388 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL7A1Q02388 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL7A1Q02388 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL7A1Q02388 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL7A1Q02388 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL7A1Q02388 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC13.94□□□□□ -0.18
COL7A1Q02388 KRT18P31-201ENST00000506277 1292 ntBASIC13.94□□□□□ -0.18
COL7A1Q02388 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL7A1Q02388 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC13.94□□□□□ -0.18
COL7A1Q02388 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC13.94□□□□□ -0.18
COL7A1Q02388 EP400NL-214ENST00000641289 2402 ntBASIC13.94□□□□□ -0.18
COL7A1Q02388 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL7A1Q02388 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL7A1Q02388 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
COL7A1Q02388 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
COL7A1Q02388 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL7A1Q02388 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC13.94□□□□□ -0.18
COL7A1Q02388 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms