Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.76■□□□□ 0.27
ABCA4P78363 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA4P78363 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA4P78363 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA4P78363 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA4P78363 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA4P78363 PCDHAC2-203ENST00000615316 3011 ntBASIC16.76■□□□□ 0.27
ABCA4P78363 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA4P78363 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
ABCA4P78363 AC091390.4-202ENST00000476426 537 ntBASIC16.76■□□□□ 0.27
ABCA4P78363 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA4P78363 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.76■□□□□ 0.27
ABCA4P78363 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.76■□□□□ 0.27
ABCA4P78363 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA4P78363 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA4P78363 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
ABCA4P78363 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC16.75■□□□□ 0.27
ABCA4P78363 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC16.75■□□□□ 0.27
ABCA4P78363 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
ABCA4P78363 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
ABCA4P78363 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA4P78363 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA4P78363 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.75■□□□□ 0.27
ABCA4P78363 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.75■□□□□ 0.27
ABCA4P78363 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA4P78363 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA4P78363 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA4P78363 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC16.75■□□□□ 0.27
ABCA4P78363 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA4P78363 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA4P78363 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
ABCA4P78363 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA4P78363 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.75■□□□□ 0.27
ABCA4P78363 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
ABCA4P78363 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
ABCA4P78363 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
ABCA4P78363 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC16.74■□□□□ 0.27
ABCA4P78363 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ABCA4P78363 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC16.74■□□□□ 0.27
ABCA4P78363 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.74■□□□□ 0.27
ABCA4P78363 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
ABCA4P78363 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ABCA4P78363 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ABCA4P78363 FEM1AP1-201ENST00000431297 1995 ntBASIC16.74■□□□□ 0.27
ABCA4P78363 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ABCA4P78363 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ABCA4P78363 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ABCA4P78363 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
ABCA4P78363 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.74■□□□□ 0.27
ABCA4P78363 AC010203.1-204ENST00000548782 407 ntBASIC16.74■□□□□ 0.27
ABCA4P78363 AC139887.4-201ENST00000607877 719 ntBASIC16.74■□□□□ 0.27
ABCA4P78363 AC011298.2-201ENST00000617989 482 ntBASIC16.74■□□□□ 0.27
ABCA4P78363 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ABCA4P78363 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
ABCA4P78363 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC16.74■□□□□ 0.27
ABCA4P78363 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
ABCA4P78363 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC16.73■□□□□ 0.27
ABCA4P78363 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
ABCA4P78363 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC16.73■□□□□ 0.27
ABCA4P78363 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.73■□□□□ 0.27
ABCA4P78363 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
ABCA4P78363 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
ABCA4P78363 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC16.73■□□□□ 0.27
ABCA4P78363 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
ABCA4P78363 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
ABCA4P78363 AC092338.2-201ENST00000568827 1415 ntBASIC16.73■□□□□ 0.27
ABCA4P78363 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ABCA4P78363 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC16.73■□□□□ 0.27
ABCA4P78363 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
ABCA4P78363 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ABCA4P78363 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.73■□□□□ 0.27
ABCA4P78363 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ABCA4P78363 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC16.73■□□□□ 0.27
ABCA4P78363 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.73■□□□□ 0.27
ABCA4P78363 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
ABCA4P78363 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
ABCA4P78363 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
ABCA4P78363 DERL1-203ENST00000419562 918 ntTSL 2 BASIC16.73■□□□□ 0.27
ABCA4P78363 AC004980.1-204ENST00000429707 299 ntBASIC16.73■□□□□ 0.27
ABCA4P78363 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.73■□□□□ 0.27
ABCA4P78363 AC116562.4-202ENST00000641738 218 ntBASIC16.73■□□□□ 0.27
ABCA4P78363 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ABCA4P78363 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
ABCA4P78363 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
ABCA4P78363 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ABCA4P78363 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
ABCA4P78363 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ABCA4P78363 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
ABCA4P78363 AL359075.1-203ENST00000462729 1002 ntBASIC16.72■□□□□ 0.27
ABCA4P78363 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.72■□□□□ 0.27
ABCA4P78363 CLEC4GP1-201ENST00000596555 870 ntBASIC16.72■□□□□ 0.27
ABCA4P78363 AC010653.2-201ENST00000623505 997 ntBASIC16.72■□□□□ 0.27
ABCA4P78363 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
ABCA4P78363 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ABCA4P78363 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ABCA4P78363 LINC01465-201ENST00000408887 1940 ntBASIC16.72■□□□□ 0.27
ABCA4P78363 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ABCA4P78363 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ABCA4P78363 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC16.72■□□□□ 0.27
ABCA4P78363 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms