Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.89■□□□□ 0.94
COL4A4P53420 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.89■□□□□ 0.94
COL4A4P53420 AC011558.1-201ENST00000623459 338 ntBASIC20.89■□□□□ 0.94
COL4A4P53420 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.89■□□□□ 0.94
COL4A4P53420 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL4A4P53420 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.89■□□□□ 0.93
COL4A4P53420 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.89■□□□□ 0.93
COL4A4P53420 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.89■□□□□ 0.93
COL4A4P53420 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.89■□□□□ 0.93
COL4A4P53420 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.89■□□□□ 0.93
COL4A4P53420 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
COL4A4P53420 AC116351.2-201ENST00000606540 1585 ntBASIC20.89■□□□□ 0.93
COL4A4P53420 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A4P53420 AL157384.1-201ENST00000445995 2473 ntBASIC20.89■□□□□ 0.93
COL4A4P53420 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A4P53420 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A4P53420 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.89■□□□□ 0.93
COL4A4P53420 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A4P53420 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A4P53420 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
COL4A4P53420 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.89■□□□□ 0.93
COL4A4P53420 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.89■□□□□ 0.93
COL4A4P53420 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.89■□□□□ 0.93
COL4A4P53420 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A4P53420 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.89■□□□□ 0.93
COL4A4P53420 HLA-A-209ENST00000638375 975 ntBASIC20.89■□□□□ 0.93
COL4A4P53420 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A4P53420 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A4P53420 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.88■□□□□ 0.93
COL4A4P53420 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A4P53420 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.88■□□□□ 0.93
COL4A4P53420 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
COL4A4P53420 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
COL4A4P53420 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A4P53420 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.88■□□□□ 0.93
COL4A4P53420 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
COL4A4P53420 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.88■□□□□ 0.93
COL4A4P53420 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A4P53420 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.88■□□□□ 0.93
COL4A4P53420 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.88■□□□□ 0.93
COL4A4P53420 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A4P53420 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.88■□□□□ 0.93
COL4A4P53420 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A4P53420 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.88■□□□□ 0.93
COL4A4P53420 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.88■□□□□ 0.93
COL4A4P53420 VENTXP5-201ENST00000523979 775 ntBASIC20.88■□□□□ 0.93
COL4A4P53420 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.88■□□□□ 0.93
COL4A4P53420 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A4P53420 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.88■□□□□ 0.93
COL4A4P53420 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.88■□□□□ 0.93
COL4A4P53420 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A4P53420 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A4P53420 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.87■□□□□ 0.93
COL4A4P53420 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A4P53420 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A4P53420 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
COL4A4P53420 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
COL4A4P53420 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
COL4A4P53420 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A4P53420 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.87■□□□□ 0.93
COL4A4P53420 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
COL4A4P53420 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A4P53420 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
COL4A4P53420 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
COL4A4P53420 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A4P53420 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A4P53420 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A4P53420 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.87■□□□□ 0.93
COL4A4P53420 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
COL4A4P53420 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A4P53420 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
COL4A4P53420 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.87■□□□□ 0.93
COL4A4P53420 SMG8-203ENST00000578922 2178 ntBASIC20.87■□□□□ 0.93
COL4A4P53420 SLC25A1P2-201ENST00000430693 912 ntBASIC20.86■□□□□ 0.93
COL4A4P53420 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.86■□□□□ 0.93
COL4A4P53420 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.86■□□□□ 0.93
COL4A4P53420 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.86■□□□□ 0.93
COL4A4P53420 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.86■□□□□ 0.93
COL4A4P53420 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A4P53420 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A4P53420 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A4P53420 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.86■□□□□ 0.93
COL4A4P53420 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A4P53420 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.86■□□□□ 0.93
COL4A4P53420 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A4P53420 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.86■□□□□ 0.93
COL4A4P53420 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.86■□□□□ 0.93
COL4A4P53420 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A4P53420 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A4P53420 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
COL4A4P53420 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A4P53420 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A4P53420 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.86■□□□□ 0.93
COL4A4P53420 HOMER2P1-201ENST00000455653 964 ntBASIC20.86■□□□□ 0.93
COL4A4P53420 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20.86■□□□□ 0.93
COL4A4P53420 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A4P53420 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.86■□□□□ 0.93
COL4A4P53420 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.86■□□□□ 0.93
COL4A4P53420 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
COL4A4P53420 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms