Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC211429.1-201ENST00000415277 523 ntBASIC20.55■□□□□ 0.88
BDNFP23560 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
BDNFP23560 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BDNFP23560 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.55■□□□□ 0.88
BDNFP23560 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.55■□□□□ 0.88
BDNFP23560 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
BDNFP23560 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
BDNFP23560 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.55■□□□□ 0.88
BDNFP23560 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.55■□□□□ 0.88
BDNFP23560 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BDNFP23560 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.55■□□□□ 0.88
BDNFP23560 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.55■□□□□ 0.88
BDNFP23560 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
BDNFP23560 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BDNFP23560 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
BDNFP23560 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
BDNFP23560 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.55■□□□□ 0.88
BDNFP23560 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
BDNFP23560 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
BDNFP23560 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.55■□□□□ 0.88
BDNFP23560 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
BDNFP23560 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
BDNFP23560 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BDNFP23560 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.54■□□□□ 0.88
BDNFP23560 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BDNFP23560 AC011506.1-201ENST00000474329 610 ntBASIC20.54■□□□□ 0.88
BDNFP23560 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
BDNFP23560 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.54■□□□□ 0.88
BDNFP23560 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.54■□□□□ 0.88
BDNFP23560 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.54■□□□□ 0.88
BDNFP23560 AP000525.1-201ENST00000608286 694 ntBASIC20.54■□□□□ 0.88
BDNFP23560 MIR6786-201ENST00000616843 113 ntBASIC20.54■□□□□ 0.88
BDNFP23560 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BDNFP23560 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BDNFP23560 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BDNFP23560 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
BDNFP23560 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BDNFP23560 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BDNFP23560 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BDNFP23560 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BDNFP23560 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.54■□□□□ 0.88
BDNFP23560 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BDNFP23560 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.54■□□□□ 0.88
BDNFP23560 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
BDNFP23560 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BDNFP23560 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.53■□□□□ 0.88
BDNFP23560 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BDNFP23560 AC087499.1-201ENST00000418141 1075 ntBASIC20.53■□□□□ 0.88
BDNFP23560 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.53■□□□□ 0.88
BDNFP23560 B3GAT3P1-201ENST00000471720 806 ntBASIC20.53■□□□□ 0.88
BDNFP23560 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
BDNFP23560 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
BDNFP23560 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.53■□□□□ 0.88
BDNFP23560 AC026271.3-201ENST00000571884 352 ntBASIC20.53■□□□□ 0.88
BDNFP23560 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.53■□□□□ 0.88
BDNFP23560 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.53■□□□□ 0.88
BDNFP23560 FSCN1P1-201ENST00000568912 1481 ntBASIC20.53■□□□□ 0.88
BDNFP23560 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.53■□□□□ 0.88
BDNFP23560 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.53■□□□□ 0.88
BDNFP23560 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BDNFP23560 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BDNFP23560 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
BDNFP23560 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BDNFP23560 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
BDNFP23560 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
BDNFP23560 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
BDNFP23560 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
BDNFP23560 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
BDNFP23560 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
BDNFP23560 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
BDNFP23560 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.52■□□□□ 0.88
BDNFP23560 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
BDNFP23560 ECEL1P3-201ENST00000427961 737 ntBASIC20.52■□□□□ 0.88
BDNFP23560 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.52■□□□□ 0.88
BDNFP23560 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.52■□□□□ 0.88
BDNFP23560 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.52■□□□□ 0.88
BDNFP23560 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
BDNFP23560 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
BDNFP23560 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
BDNFP23560 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
BDNFP23560 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
BDNFP23560 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
BDNFP23560 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
BDNFP23560 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
BDNFP23560 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.52■□□□□ 0.87
BDNFP23560 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
BDNFP23560 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.52■□□□□ 0.87
BDNFP23560 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BDNFP23560 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
BDNFP23560 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BDNFP23560 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BDNFP23560 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BDNFP23560 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.51■□□□□ 0.87
BDNFP23560 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BDNFP23560 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BDNFP23560 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
BDNFP23560 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
BDNFP23560 MMP23A-201ENST00000234610 1017 ntBASIC20.51■□□□□ 0.87
BDNFP23560 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BDNFP23560 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms