Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.63■□□□□ 0.57
SEMA3DO95025 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.63■□□□□ 0.57
SEMA3DO95025 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.63■□□□□ 0.57
SEMA3DO95025 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.63■□□□□ 0.57
SEMA3DO95025 AC008403.3-201ENST00000598924 454 ntBASIC18.63■□□□□ 0.57
SEMA3DO95025 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.63■□□□□ 0.57
SEMA3DO95025 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
SEMA3DO95025 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SEMA3DO95025 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.63■□□□□ 0.57
SEMA3DO95025 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA3DO95025 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.63■□□□□ 0.57
SEMA3DO95025 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA3DO95025 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.62■□□□□ 0.57
SEMA3DO95025 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA3DO95025 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SEMA3DO95025 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA3DO95025 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.62■□□□□ 0.57
SEMA3DO95025 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.62■□□□□ 0.57
SEMA3DO95025 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SEMA3DO95025 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA3DO95025 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.62■□□□□ 0.57
SEMA3DO95025 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.62■□□□□ 0.57
SEMA3DO95025 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.62■□□□□ 0.57
SEMA3DO95025 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA3DO95025 KRT18P6-201ENST00000555540 1265 ntBASIC18.62■□□□□ 0.57
SEMA3DO95025 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.62■□□□□ 0.57
SEMA3DO95025 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.62■□□□□ 0.57
SEMA3DO95025 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA3DO95025 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.62■□□□□ 0.57
SEMA3DO95025 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA3DO95025 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA3DO95025 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SEMA3DO95025 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SEMA3DO95025 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA3DO95025 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.62■□□□□ 0.57
SEMA3DO95025 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA3DO95025 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA3DO95025 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SEMA3DO95025 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SEMA3DO95025 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SEMA3DO95025 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.61■□□□□ 0.57
SEMA3DO95025 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SEMA3DO95025 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SEMA3DO95025 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SEMA3DO95025 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.61■□□□□ 0.57
SEMA3DO95025 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.61■□□□□ 0.57
SEMA3DO95025 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.61■□□□□ 0.57
SEMA3DO95025 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.61■□□□□ 0.57
SEMA3DO95025 AC026366.1-201ENST00000488803 879 ntBASIC18.61■□□□□ 0.57
SEMA3DO95025 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SEMA3DO95025 KRT18P16-201ENST00000510337 1294 ntBASIC18.61■□□□□ 0.57
SEMA3DO95025 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SEMA3DO95025 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.61■□□□□ 0.57
SEMA3DO95025 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.61■□□□□ 0.57
SEMA3DO95025 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SEMA3DO95025 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SEMA3DO95025 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SEMA3DO95025 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SEMA3DO95025 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SEMA3DO95025 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SEMA3DO95025 AC005332.7-201ENST00000614046 2005 ntBASIC18.61■□□□□ 0.57
SEMA3DO95025 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
SEMA3DO95025 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SEMA3DO95025 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SEMA3DO95025 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SEMA3DO95025 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SEMA3DO95025 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SEMA3DO95025 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.6■□□□□ 0.57
SEMA3DO95025 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
SEMA3DO95025 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SEMA3DO95025 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SEMA3DO95025 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SEMA3DO95025 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SEMA3DO95025 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SEMA3DO95025 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SEMA3DO95025 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SEMA3DO95025 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.59■□□□□ 0.57
SEMA3DO95025 KRT8P8-201ENST00000434750 1448 ntBASIC18.59■□□□□ 0.57
SEMA3DO95025 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SEMA3DO95025 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SEMA3DO95025 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.59■□□□□ 0.57
SEMA3DO95025 Z82202.1-201ENST00000623446 1880 ntBASIC18.59■□□□□ 0.57
SEMA3DO95025 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms