Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDC3O75056 AL137060.1-201ENST00000618151 2648 ntBASIC19.04■□□□□ 0.64
SDC3O75056 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.04■□□□□ 0.64
SDC3O75056 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SDC3O75056 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
SDC3O75056 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.04■□□□□ 0.64
SDC3O75056 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SDC3O75056 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SDC3O75056 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SDC3O75056 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.04■□□□□ 0.64
SDC3O75056 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SDC3O75056 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
SDC3O75056 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.04■□□□□ 0.64
SDC3O75056 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SDC3O75056 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SDC3O75056 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
SDC3O75056 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.04■□□□□ 0.64
SDC3O75056 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.04■□□□□ 0.64
SDC3O75056 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SDC3O75056 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.04■□□□□ 0.64
SDC3O75056 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SDC3O75056 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SDC3O75056 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SDC3O75056 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SDC3O75056 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SDC3O75056 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
SDC3O75056 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
SDC3O75056 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.03■□□□□ 0.64
SDC3O75056 Z85996.1-201ENST00000494644 937 ntBASIC19.03■□□□□ 0.64
SDC3O75056 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SDC3O75056 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.03■□□□□ 0.64
SDC3O75056 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
SDC3O75056 AC116562.4-202ENST00000641738 218 ntBASIC19.03■□□□□ 0.64
SDC3O75056 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SDC3O75056 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
SDC3O75056 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SDC3O75056 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SDC3O75056 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SDC3O75056 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SDC3O75056 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
SDC3O75056 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SDC3O75056 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SDC3O75056 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SDC3O75056 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SDC3O75056 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.02■□□□□ 0.64
SDC3O75056 HMGA1P5-201ENST00000412453 271 ntBASIC19.02■□□□□ 0.64
SDC3O75056 BX664615.1-201ENST00000443558 458 ntBASIC19.02■□□□□ 0.64
SDC3O75056 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.02■□□□□ 0.64
SDC3O75056 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.02■□□□□ 0.64
SDC3O75056 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SDC3O75056 AC096733.2-201ENST00000609937 1394 ntBASIC19.02■□□□□ 0.64
SDC3O75056 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.02■□□□□ 0.63
SDC3O75056 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
SDC3O75056 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
SDC3O75056 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.63
SDC3O75056 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
SDC3O75056 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SDC3O75056 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SDC3O75056 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SDC3O75056 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SDC3O75056 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SDC3O75056 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SDC3O75056 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SDC3O75056 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.01■□□□□ 0.63
SDC3O75056 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SDC3O75056 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.01■□□□□ 0.63
SDC3O75056 AC117947.1-201ENST00000427448 529 ntBASIC19.01■□□□□ 0.63
SDC3O75056 CCR12P-201ENST00000446203 998 ntBASIC19.01■□□□□ 0.63
SDC3O75056 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.01■□□□□ 0.63
SDC3O75056 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.01■□□□□ 0.63
SDC3O75056 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SDC3O75056 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.01■□□□□ 0.63
SDC3O75056 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.01■□□□□ 0.63
SDC3O75056 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SDC3O75056 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
SDC3O75056 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19■□□□□ 0.63
SDC3O75056 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19■□□□□ 0.63
SDC3O75056 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19■□□□□ 0.63
SDC3O75056 AC020907.5-201ENST00000624372 1936 ntBASIC19■□□□□ 0.63
SDC3O75056 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19■□□□□ 0.63
SDC3O75056 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SDC3O75056 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19■□□□□ 0.63
SDC3O75056 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19■□□□□ 0.63
SDC3O75056 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19■□□□□ 0.63
SDC3O75056 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19■□□□□ 0.63
SDC3O75056 AC022616.7-201ENST00000525383 220 ntBASIC19■□□□□ 0.63
SDC3O75056 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
SDC3O75056 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19■□□□□ 0.63
SDC3O75056 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19■□□□□ 0.63
SDC3O75056 AC139887.4-201ENST00000607877 719 ntBASIC19■□□□□ 0.63
SDC3O75056 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SDC3O75056 AL391422.3-201ENST00000603791 2761 ntBASIC19■□□□□ 0.63
SDC3O75056 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19■□□□□ 0.63
SDC3O75056 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SDC3O75056 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SDC3O75056 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SDC3O75056 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SDC3O75056 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SDC3O75056 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.99■□□□□ 0.63
SDC3O75056 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms