Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.85■□□□□ 0.93
FOXN3O00409 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
FOXN3O00409 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.85■□□□□ 0.93
FOXN3O00409 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
FOXN3O00409 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
FOXN3O00409 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
FOXN3O00409 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
FOXN3O00409 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
FOXN3O00409 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
FOXN3O00409 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
FOXN3O00409 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
FOXN3O00409 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXN3O00409 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.84■□□□□ 0.93
FOXN3O00409 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXN3O00409 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
FOXN3O00409 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
FOXN3O00409 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXN3O00409 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
FOXN3O00409 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.84■□□□□ 0.93
FOXN3O00409 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
FOXN3O00409 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
FOXN3O00409 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.84■□□□□ 0.93
FOXN3O00409 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.84■□□□□ 0.93
FOXN3O00409 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
FOXN3O00409 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.84■□□□□ 0.93
FOXN3O00409 KRT18P6-201ENST00000555540 1265 ntBASIC20.84■□□□□ 0.93
FOXN3O00409 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.84■□□□□ 0.93
FOXN3O00409 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.84■□□□□ 0.93
FOXN3O00409 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXN3O00409 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.84■□□□□ 0.93
FOXN3O00409 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
FOXN3O00409 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXN3O00409 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
FOXN3O00409 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXN3O00409 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
FOXN3O00409 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXN3O00409 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXN3O00409 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.84■□□□□ 0.93
FOXN3O00409 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
FOXN3O00409 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXN3O00409 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXN3O00409 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXN3O00409 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXN3O00409 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
FOXN3O00409 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.83■□□□□ 0.93
FOXN3O00409 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
FOXN3O00409 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXN3O00409 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
FOXN3O00409 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXN3O00409 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.83■□□□□ 0.93
FOXN3O00409 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.83■□□□□ 0.93
FOXN3O00409 AP003097.1-201ENST00000530657 1135 ntBASIC20.83■□□□□ 0.93
FOXN3O00409 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.83■□□□□ 0.93
FOXN3O00409 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
FOXN3O00409 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
FOXN3O00409 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
FOXN3O00409 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
FOXN3O00409 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
FOXN3O00409 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
FOXN3O00409 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
FOXN3O00409 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN3O00409 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN3O00409 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN3O00409 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN3O00409 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.82■□□□□ 0.92
FOXN3O00409 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN3O00409 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN3O00409 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN3O00409 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.82■□□□□ 0.92
FOXN3O00409 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN3O00409 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.82■□□□□ 0.92
FOXN3O00409 AC026366.1-201ENST00000488803 879 ntBASIC20.82■□□□□ 0.92
FOXN3O00409 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.82■□□□□ 0.92
FOXN3O00409 AC233263.1-201ENST00000578059 224 ntBASIC20.82■□□□□ 0.92
FOXN3O00409 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN3O00409 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.82■□□□□ 0.92
FOXN3O00409 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN3O00409 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
FOXN3O00409 AC104417.2-201ENST00000562989 1793 ntBASIC20.82■□□□□ 0.92
FOXN3O00409 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN3O00409 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.82■□□□□ 0.92
FOXN3O00409 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN3O00409 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
FOXN3O00409 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
FOXN3O00409 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN3O00409 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
FOXN3O00409 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
FOXN3O00409 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN3O00409 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.81■□□□□ 0.92
FOXN3O00409 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN3O00409 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN3O00409 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN3O00409 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.81■□□□□ 0.92
FOXN3O00409 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.81■□□□□ 0.92
FOXN3O00409 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.81■□□□□ 0.92
FOXN3O00409 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN3O00409 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN3O00409 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN3O00409 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.81■□□□□ 0.92
FOXN3O00409 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms