Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 AC012414.1-201ENST00000556676 535 ntBASIC14.23□□□□□ -0.13
SMKR1H3BMG3 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 AC027682.1-201ENST00000562846 899 ntBASIC14.23□□□□□ -0.13
SMKR1H3BMG3 TRIR-205ENST00000592273 783 ntTSL 3 BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 MAG-206ENST00000597035 542 ntTSL 4 BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 WIZP1-201ENST00000531444 2299 ntBASIC14.23□□□□□ -0.13
SMKR1H3BMG3 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 AC105265.2-201ENST00000467189 838 ntBASIC14.22□□□□□ -0.13
SMKR1H3BMG3 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 AL355001.2-201ENST00000620617 1191 ntBASIC14.22□□□□□ -0.13
SMKR1H3BMG3 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SMKR1H3BMG3 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 AC090164.3-201ENST00000610780 2143 ntBASIC14.21□□□□□ -0.13
SMKR1H3BMG3 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 AC079598.2-202ENST00000546624 1451 ntBASIC14.21□□□□□ -0.13
SMKR1H3BMG3 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 AL356652.1-201ENST00000615962 565 ntBASIC14.21□□□□□ -0.13
SMKR1H3BMG3 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 PODN-203ENST00000395871 2744 ntTSL 5 BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SMKR1H3BMG3 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SMKR1H3BMG3 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
SMKR1H3BMG3 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SMKR1H3BMG3 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SMKR1H3BMG3 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SMKR1H3BMG3 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SMKR1H3BMG3 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms