Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 KRT8P17-201ENST00000453110 1448 ntBASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 AF228730.7-201ENST00000641842 219 ntBASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.57■□□□□ 0.4
COL6A6A6NMZ7 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 LINC02084-201ENST00000606069 1096 ntBASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A6A6NMZ7 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 RASA4DP-201ENST00000460726 1199 ntBASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A6A6NMZ7 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 DRAXINP1-201ENST00000437611 948 ntBASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A6A6NMZ7 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 KRT8P8-201ENST00000434750 1448 ntBASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 AC092865.5-201ENST00000545435 363 ntBASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms