Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 AC091390.4-202ENST00000476426 537 ntBASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 AP005242.2-201ENST00000580065 1175 ntBASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 AC010947.1-201ENST00000623454 693 ntBASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 NAPSB-206ENST00000562112 1266 ntBASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 AC145285.6-201ENST00000604632 637 ntBASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMIM28A0A1B0GU29 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 CRYGFP-201ENST00000418459 633 ntBASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMIM28A0A1B0GU29 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.89■□□□□ 0.94
SMIM28A0A1B0GU29 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SMIM28A0A1B0GU29 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SMIM28A0A1B0GU29 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.89■□□□□ 0.94
SMIM28A0A1B0GU29 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SMIM28A0A1B0GU29 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SMIM28A0A1B0GU29 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMIM28A0A1B0GU29 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SMIM28A0A1B0GU29 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
SMIM28A0A1B0GU29 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SMIM28A0A1B0GU29 FAM210CP-201ENST00000445714 574 ntBASIC20.89■□□□□ 0.93
SMIM28A0A1B0GU29 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.89■□□□□ 0.93
SMIM28A0A1B0GU29 FAM207BP-201ENST00000447172 505 ntBASIC20.89■□□□□ 0.93
SMIM28A0A1B0GU29 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.89■□□□□ 0.93
SMIM28A0A1B0GU29 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.89■□□□□ 0.93
SMIM28A0A1B0GU29 SLC25A1P4-201ENST00000567977 778 ntBASIC20.89■□□□□ 0.93
SMIM28A0A1B0GU29 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMIM28A0A1B0GU29 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SMIM28A0A1B0GU29 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMIM28A0A1B0GU29 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.89■□□□□ 0.93
SMIM28A0A1B0GU29 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SMIM28A0A1B0GU29 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMIM28A0A1B0GU29 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMIM28A0A1B0GU29 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMIM28A0A1B0GU29 LINC01568-207ENST00000641790 1380 ntBASIC20.88■□□□□ 0.93
SMIM28A0A1B0GU29 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMIM28A0A1B0GU29 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMIM28A0A1B0GU29 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMIM28A0A1B0GU29 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms