Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.21
LIMD1Q9UGP4 SERPINB8-203ENST00000397985 3477 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
LIMD1Q9UGP4 ZBTB18-201ENST00000358704 3851 ntAPPRIS P2 TSL 1 (best) BASIC7.46□□□□□ -1.21
LIMD1Q9UGP4 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.21
LIMD1Q9UGP4 CEACAM5-203ENST00000405816 2354 ntAPPRIS P3 TSL 1 (best) BASIC7.46□□□□□ -1.21
LIMD1Q9UGP4 AC092162.3-201ENST00000624511 1624 ntBASIC7.46□□□□□ -1.21
LIMD1Q9UGP4 ZNF385B-202ENST00000409343 2750 ntTSL 2 BASIC7.46□□□□□ -1.21
LIMD1Q9UGP4 ZFP2-202ENST00000520301 2043 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 RNU6-984P-201ENST00000363236 109 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 RNU6-254P-201ENST00000363377 107 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 Y_RNA.145-201ENST00000363527 102 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 MIR559-201ENST00000385188 96 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 MIR152-201ENST00000385212 87 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 SUMO2P13-201ENST00000403109 272 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 RN7SKP91-201ENST00000410852 288 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 PTCSC2-201ENST00000430058 204 ntTSL 2 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 ANKRD54P1-201ENST00000433115 471 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 MTCO3P2-201ENST00000457365 171 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 RNU7-63P-201ENST00000459054 62 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 SNORD19B-201ENST00000459623 84 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 APOOP2-201ENST00000461561 539 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 MTCO2P29-201ENST00000465212 189 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 AC015524.1-201ENST00000491585 472 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 AC108471.1-201ENST00000513977 287 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 AC104986.1-201ENST00000517978 436 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 OR52K3P-201ENST00000531655 943 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 RPS4XP21-201ENST00000603814 750 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 BX323046.1-201ENST00000610145 535 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 MIR6503-201ENST00000622884 86 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 U6.101-201ENST00000637707 76 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 OAZ3-211ENST00000639906 708 ntAPPRIS P2 TSL 5 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 GDNF-202ENST00000344622 3655 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 PLP1-220ENST00000612423 3132 ntAPPRIS P1 TSL 2 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 LINC01653-201ENST00000456026 1728 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 RIOK3P1-201ENST00000418778 1528 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 NAPEPLD-209ENST00000465647 2380 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 TMCC1P1-201ENST00000518897 1980 ntBASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 NPIPB11-201ENST00000524087 3653 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
LIMD1Q9UGP4 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 GLYATL2-201ENST00000287275 1640 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 HDAC9-218ENST00000456174 2307 ntTSL 2 BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 HKR1-223ENST00000591471 3472 ntTSL 2 BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 AC114546.3-201ENST00000623582 1734 ntBASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 RPL7P26-201ENST00000333817 754 ntBASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 RNA5SP472-201ENST00000363868 119 ntBASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 AL136116.1-201ENST00000403591 381 ntBASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 AL133260.1-201ENST00000405720 405 ntBASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 HYKK-202ENST00000408962 847 ntTSL 5 BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 AC019097.1-201ENST00000424783 735 ntBASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 TRBV29OR9-2-201ENST00000427589 333 ntBASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 Z83313.1-201ENST00000433780 718 ntBASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 HMGB1P18-201ENST00000438801 619 ntBASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 CLDN34-201ENST00000445307 995 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 TIMM8BP2-201ENST00000445940 251 ntBASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 AC002381.1-201ENST00000447049 280 ntBASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 RPL23AP15-201ENST00000450202 459 ntBASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 RN7SL70P-201ENST00000478322 302 ntBASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 KLHL2P1-201ENST00000508691 521 ntBASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 EIF3KP3-201ENST00000514461 639 ntBASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 STX18-IT1-201ENST00000515487 542 ntTSL 4 BASIC7.45□□□□□ -1.22
LIMD1Q9UGP4 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC7.45□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 127.5 ms