Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 RN7SKP108-201ENST00000411367 328 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC098592.2-201ENST00000413158 265 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC008173.1-201ENST00000418901 264 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 TRIM60P10Y-201ENST00000425589 751 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 USP9YP18-201ENST00000425912 695 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 BX119321.1-201ENST00000428912 797 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC098818.1-201ENST00000478593 252 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC117522.3-201ENST00000507974 584 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 RNA5SP441-201ENST00000516809 88 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AP003033.2-201ENST00000528901 805 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC123904.3-201ENST00000547218 814 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC121758.1-202ENST00000556917 658 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC005730.3-201ENST00000583067 366 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 MIR4999-201ENST00000585029 91 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC119403.2-201ENST00000590960 598 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AL159169.3-201ENST00000608871 561 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC096861.1-201ENST00000616652 240 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC006338.1-201ENST00000618453 749 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AL136221.1-201ENST00000621449 509 ntBASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 ING3-204ENST00000431467 1447 ntTSL 2 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 ELF2P3-201ENST00000445099 1506 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 MTND5P23-201ENST00000430812 1655 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AP001029.2-203ENST00000589795 4910 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 RNFT1P3-201ENST00000340898 1052 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 OR10R3P-201ENST00000361688 942 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 SNORA75-201ENST00000384158 137 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC007068.1-201ENST00000396690 844 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 TAF9BP2-201ENST00000400856 499 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AL356057.2-201ENST00000403318 432 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 MTCO3P31-201ENST00000405526 789 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 NACAP7-201ENST00000407371 609 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 RNU2-65P-201ENST00000410162 185 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 MYL6P5-201ENST00000412707 459 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC245096.1-201ENST00000413104 546 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AL035422.1-201ENST00000414193 397 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 TRBV24OR9-2-201ENST00000416632 435 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 C1DP2-201ENST00000418167 426 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 FAM183DP-201ENST00000421987 399 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC012498.1-201ENST00000424037 437 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 GTF2IP2-201ENST00000424290 697 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC108479.1-201ENST00000431142 427 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AL662791.1-201ENST00000441992 928 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 ZNF619P1-201ENST00000446539 752 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC016027.4-201ENST00000450866 277 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 MTND1P11-201ENST00000456661 876 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 RN7SL254P-201ENST00000460609 284 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC026348.1-201ENST00000462549 1053 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 RN7SL197P-201ENST00000466981 299 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC6.81□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms