Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 RPL32P9-201ENST00000487963 407 ntBASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 AC138832.1-201ENST00000522871 556 ntBASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 AC090525.3-201ENST00000605601 189 ntBASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 AC211433.2-201ENST00000608433 387 ntBASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 AC096586.1-201ENST00000610267 561 ntBASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 AC091932.2-201ENST00000623014 291 ntBASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 AP003497.2-201ENST00000624220 967 ntBASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 OR52B5P-202ENST00000641118 1110 ntBASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 MAPK10-349ENST00000641767 3661 ntBASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 AC083843.2-201ENST00000568248 6253 ntBASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
CHMP4CQ96CF2 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC005005.4-201ENST00000623789 16698 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC112198.2-201ENST00000426589 6996 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 RNU6-932P-201ENST00000391108 106 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 RPL23AP59-201ENST00000399415 461 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 RNU6ATAC21P-201ENST00000408656 126 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 RN7SKP273-201ENST00000411392 314 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC013404.1-201ENST00000413068 249 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 LINC01881-201ENST00000416103 412 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 SLC9B1P4-201ENST00000421957 1288 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 SEPT14P24-201ENST00000447236 180 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 MYO5BP2-201ENST00000449815 1277 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AL009048.1-201ENST00000450437 298 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC104634.1-201ENST00000452720 462 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AL133244.1-201ENST00000456007 258 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 HMGB1P40-201ENST00000525121 540 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 MORF4L1P3-201ENST00000525966 950 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 LSM3P2-201ENST00000551246 273 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AL049779.2-201ENST00000553847 315 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC006116.5-201ENST00000591936 559 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC005252.1-201ENST00000604518 1063 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AL157392.4-201ENST00000609756 345 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC138907.10-201ENST00000623708 983 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 WDR75-207ENST00000631047 270 ntTSL 5 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC074101.1-201ENST00000637861 241 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC007996.1-201ENST00000620414 2821 ntBASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP4CQ96CF2 AC104260.2-201ENST00000623551 3497 ntBASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 AC005294.1-201ENST00000355509 281 ntBASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 MIR223-201ENST00000385204 110 ntBASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 RNA5SP339-201ENST00000390987 122 ntBASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 AL035419.1-201ENST00000397037 564 ntBASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 HSPA8P15-201ENST00000401676 786 ntBASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 RNA5SP487-201ENST00000410186 122 ntBASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 CNOT7P2-201ENST00000441051 832 ntBASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 AL358794.1-201ENST00000445689 381 ntBASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 AC020898.1-201ENST00000474167 787 ntBASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 RN7SL222P-201ENST00000476452 299 ntBASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 AC079841.1-201ENST00000481228 950 ntBASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 RN7SL727P-201ENST00000482164 296 ntBASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC6.31□□□□□ -1.4
CHMP4CQ96CF2 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms