Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 AC006116.1-201ENST00000587908 2171 ntBASIC6.62□□□□□ -1.35
MSX1P28360 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC6.62□□□□□ -1.35
MSX1P28360 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC6.62□□□□□ -1.35
MSX1P28360 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC6.62□□□□□ -1.35
MSX1P28360 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.62□□□□□ -1.35
MSX1P28360 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 LINC01697-202ENST00000426534 1764 ntTSL 2 BASIC6.62□□□□□ -1.35
MSX1P28360 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 FAM71F1-207ENST00000485070 1574 ntTSL 2 BASIC6.61□□□□□ -1.35
MSX1P28360 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX1P28360 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC6.61□□□□□ -1.35
MSX1P28360 GPR1-AS-201ENST00000623040 3708 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 NF1P8-201ENST00000415351 1461 ntBASIC6.61□□□□□ -1.35
MSX1P28360 SRFBP1-201ENST00000339397 2855 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 GAPVD1-201ENST00000265956 2667 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX1P28360 ZNF587B-201ENST00000442832 3339 ntTSL 2 BASIC6.61□□□□□ -1.35
MSX1P28360 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 AGBL1-205ENST00000635782 3201 ntAPPRIS P2 TSL 5 BASIC6.61□□□□□ -1.35
MSX1P28360 EZH2-203ENST00000460911 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
MSX1P28360 Y_RNA.46-201ENST00000362695 102 ntBASIC6.61□□□□□ -1.35
MSX1P28360 RNU6-505P-201ENST00000384427 107 ntBASIC6.61□□□□□ -1.35
MSX1P28360 SNORD116-29-201ENST00000384516 83 ntBASIC6.61□□□□□ -1.35
MSX1P28360 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 Y_RNA.618-201ENST00000410949 107 ntBASIC6.61□□□□□ -1.35
MSX1P28360 RPS6P23-201ENST00000413224 722 ntBASIC6.61□□□□□ -1.35
MSX1P28360 AL662791.3-201ENST00000413771 776 ntBASIC6.61□□□□□ -1.35
MSX1P28360 AL596448.1-201ENST00000415024 392 ntBASIC6.61□□□□□ -1.35
MSX1P28360 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC6.61□□□□□ -1.35
MSX1P28360 MTCYBP9-201ENST00000431021 303 ntBASIC6.61□□□□□ -1.35
MSX1P28360 RPL14P5-201ENST00000436474 730 ntBASIC6.61□□□□□ -1.35
MSX1P28360 AC079781.1-201ENST00000441505 394 ntBASIC6.61□□□□□ -1.35
MSX1P28360 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX1P28360 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC6.61□□□□□ -1.35
MSX1P28360 SBDSP1-204ENST00000453858 737 ntBASIC6.61□□□□□ -1.35
MSX1P28360 RBMY2EP-202ENST00000456360 940 ntBASIC6.61□□□□□ -1.35
MSX1P28360 AC009411.2-201ENST00000458359 539 ntTSL 4 BASIC6.61□□□□□ -1.35
MSX1P28360 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX1P28360 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC6.61□□□□□ -1.35
MSX1P28360 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX1P28360 HMGB3P15-201ENST00000507326 574 ntBASIC6.61□□□□□ -1.35
MSX1P28360 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC6.61□□□□□ -1.35
MSX1P28360 LINC01950-202ENST00000513273 572 ntTSL 2 BASIC6.61□□□□□ -1.35
MSX1P28360 AC017037.2-201ENST00000513850 890 ntBASIC6.61□□□□□ -1.35
MSX1P28360 RNU6-201P-201ENST00000517100 61 ntBASIC6.61□□□□□ -1.35
MSX1P28360 SNORA25.17-201ENST00000517184 124 ntBASIC6.61□□□□□ -1.35
MSX1P28360 RGS5-220ENST00000528689 566 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX1P28360 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC6.61□□□□□ -1.35
MSX1P28360 ARL1-211ENST00000551828 776 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX1P28360 CHEK2P2-201ENST00000554701 672 ntBASIC6.61□□□□□ -1.35
MSX1P28360 AL117187.1-201ENST00000555482 181 ntBASIC6.61□□□□□ -1.35
MSX1P28360 AC026464.5-201ENST00000562497 722 ntBASIC6.61□□□□□ -1.35
MSX1P28360 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX1P28360 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC6.61□□□□□ -1.35
MSX1P28360 AP001330.4-201ENST00000604350 154 ntBASIC6.61□□□□□ -1.35
MSX1P28360 AC004908.2-201ENST00000609090 574 ntBASIC6.61□□□□□ -1.35
MSX1P28360 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC6.61□□□□□ -1.35
MSX1P28360 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC6.61□□□□□ -1.35
MSX1P28360 AC243829.2-201ENST00000617914 470 ntTSL 3 BASIC6.61□□□□□ -1.35
MSX1P28360 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX1P28360 AC078909.2-201ENST00000620584 398 ntBASIC6.61□□□□□ -1.35
MSX1P28360 AL138693.1-201ENST00000622219 129 ntBASIC6.61□□□□□ -1.35
MSX1P28360 AC130448.2-201ENST00000624082 374 ntBASIC6.61□□□□□ -1.35
MSX1P28360 AL353572.3-201ENST00000636536 670 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
MSX1P28360 AC010149.2-201ENST00000637608 315 ntBASIC6.61□□□□□ -1.35
MSX1P28360 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC6.61□□□□□ -1.35
MSX1P28360 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX1P28360 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC6.61□□□□□ -1.35
MSX1P28360 AL049647.1-201ENST00000319682 1789 ntTSL 2 BASIC6.61□□□□□ -1.35
MSX1P28360 AL049634.1-201ENST00000453770 1720 ntBASIC6.61□□□□□ -1.35
MSX1P28360 AC078880.4-201ENST00000617627 1749 ntBASIC6.61□□□□□ -1.35
MSX1P28360 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 AC091046.3-201ENST00000631455 1574 ntBASIC6.61□□□□□ -1.35
MSX1P28360 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSX1P28360 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
MSX1P28360 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSX1P28360 LINC02447-201ENST00000499242 1500 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX1P28360 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
MSX1P28360 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSX1P28360 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX1P28360 SEC23IP-208ENST00000543134 1461 ntTSL 5 BASIC6.6□□□□□ -1.35
MSX1P28360 MTND5P33-201ENST00000571250 1450 ntBASIC6.6□□□□□ -1.35
MSX1P28360 CA1-225ENST00000626824 2405 ntTSL 5 BASIC6.6□□□□□ -1.35
MSX1P28360 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC6.6□□□□□ -1.35
MSX1P28360 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
MSX1P28360 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC6.6□□□□□ -1.35
MSX1P28360 OR5M2P-202ENST00000641241 4242 ntBASIC6.6□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms