Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
USP39Q53GS9 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP39Q53GS9 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP39Q53GS9 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.81□□□□□ -1.48
USP39Q53GS9 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.81□□□□□ -1.48
USP39Q53GS9 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP39Q53GS9 THAP12P9-201ENST00000503971 2360 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.81□□□□□ -1.48
USP39Q53GS9 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.81□□□□□ -1.48
USP39Q53GS9 MTND5P23-201ENST00000430812 1655 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP39Q53GS9 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
USP39Q53GS9 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP39Q53GS9 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
USP39Q53GS9 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
USP39Q53GS9 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP39Q53GS9 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP39Q53GS9 AC073544.1-201ENST00000600110 1595 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP39Q53GS9 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
USP39Q53GS9 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.8□□□□□ -1.48
USP39Q53GS9 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.8□□□□□ -1.48
USP39Q53GS9 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.8□□□□□ -1.48
USP39Q53GS9 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
USP39Q53GS9 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.8□□□□□ -1.48
USP39Q53GS9 AC133552.1-201ENST00000569988 4007 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP39Q53GS9 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
USP39Q53GS9 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP39Q53GS9 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.8□□□□□ -1.48
USP39Q53GS9 OR6C64P-201ENST00000419708 825 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 BX119904.1-201ENST00000432026 348 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC5.8□□□□□ -1.48
USP39Q53GS9 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC5.8□□□□□ -1.48
USP39Q53GS9 AL663074.2-201ENST00000440621 479 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 AL359385.1-201ENST00000456509 365 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 RN7SL51P-201ENST00000468230 285 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC5.8□□□□□ -1.48
USP39Q53GS9 AC009120.1-201ENST00000493458 473 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 HIGD1AP14-201ENST00000507617 282 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 TOMM22P4-201ENST00000511318 336 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.8□□□□□ -1.48
USP39Q53GS9 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC5.8□□□□□ -1.48
USP39Q53GS9 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC5.8□□□□□ -1.48
USP39Q53GS9 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.8□□□□□ -1.48
USP39Q53GS9 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC5.8□□□□□ -1.48
USP39Q53GS9 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.8□□□□□ -1.48
USP39Q53GS9 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC5.8□□□□□ -1.48
USP39Q53GS9 AC087897.1-201ENST00000550134 156 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.8□□□□□ -1.48
USP39Q53GS9 AL512310.9-201ENST00000553311 948 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 AL133241.1-201ENST00000556832 487 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 NPM1P42-201ENST00000560329 862 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC5.8□□□□□ -1.48
USP39Q53GS9 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC5.8□□□□□ -1.48
USP39Q53GS9 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC5.8□□□□□ -1.48
USP39Q53GS9 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC5.8□□□□□ -1.48
USP39Q53GS9 AC008759.1-201ENST00000589783 983 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 RSL24D1P11-201ENST00000591045 491 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 AC010738.1-201ENST00000604970 987 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 AL139286.2-201ENST00000606838 396 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 AP003392.5-201ENST00000607857 415 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC5.8□□□□□ -1.48
USP39Q53GS9 AC022140.2-201ENST00000623500 188 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC5.8□□□□□ -1.48
USP39Q53GS9 SAMMSON-209ENST00000641222 1100 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
USP39Q53GS9 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.8□□□□□ -1.48
USP39Q53GS9 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP39Q53GS9 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP39Q53GS9 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
USP39Q53GS9 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.8□□□□□ -1.48
USP39Q53GS9 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
USP39Q53GS9 MRE11P1-201ENST00000464884 2127 ntBASIC5.8□□□□□ -1.48
USP39Q53GS9 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
USP39Q53GS9 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
USP39Q53GS9 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
USP39Q53GS9 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.79□□□□□ -1.48
USP39Q53GS9 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.79□□□□□ -1.48
USP39Q53GS9 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.79□□□□□ -1.48
USP39Q53GS9 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
USP39Q53GS9 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
USP39Q53GS9 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
USP39Q53GS9 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
USP39Q53GS9 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.79□□□□□ -1.48
USP39Q53GS9 RNA5SP443-201ENST00000363083 132 ntBASIC5.79□□□□□ -1.48
USP39Q53GS9 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
USP39Q53GS9 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
USP39Q53GS9 RNU6-1215P-201ENST00000384441 102 ntBASIC5.79□□□□□ -1.48
USP39Q53GS9 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.79□□□□□ -1.48
USP39Q53GS9 AC016831.2-201ENST00000417179 352 ntBASIC5.79□□□□□ -1.48
USP39Q53GS9 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.79□□□□□ -1.48
USP39Q53GS9 PTP4A1P1-201ENST00000420539 515 ntBASIC5.79□□□□□ -1.48
USP39Q53GS9 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.79□□□□□ -1.48
USP39Q53GS9 AL593851.1-201ENST00000426171 157 ntBASIC5.79□□□□□ -1.48
USP39Q53GS9 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.79□□□□□ -1.48
USP39Q53GS9 AC073410.1-201ENST00000435125 589 ntBASIC5.79□□□□□ -1.48
USP39Q53GS9 AC129850.1-201ENST00000436203 508 ntBASIC5.79□□□□□ -1.48
USP39Q53GS9 AL512326.1-201ENST00000443050 721 ntBASIC5.79□□□□□ -1.48
USP39Q53GS9 RPL6P5-201ENST00000445678 828 ntBASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 133.1 ms