Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 GAPDHP62-201ENST00000515313 990 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 BX510359.5-201ENST00000515651 304 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AC110760.3-201ENST00000598794 467 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AC005252.1-201ENST00000604518 1063 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AC105105.5-201ENST00000622635 1294 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AP002782.1-201ENST00000623107 614 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 BX649567.1-201ENST00000642071 1134 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AC138907.8-201ENST00000623981 2256 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 RNU6-1005P-201ENST00000384519 107 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 RNU4-34P-201ENST00000410431 124 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 RIMKLBP2-201ENST00000424737 654 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 HMGB3P10-201ENST00000434734 572 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 GAPDHP58-201ENST00000438477 1006 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AC073052.1-201ENST00000440417 714 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 NPM1P39-201ENST00000449818 867 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AL133445.1-201ENST00000467051 452 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 SIAH1P1-201ENST00000479411 923 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 RN7SL547P-201ENST00000490793 290 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AC079064.1-201ENST00000528365 362 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 LSM3P2-201ENST00000551246 273 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AL049830.4-201ENST00000555149 351 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AL109741.3-201ENST00000561748 592 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AC009094.1-201ENST00000564443 426 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 VN1R78P-201ENST00000597393 564 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 SUGT1P3-202ENST00000604259 383 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AC116651.1-201ENST00000609724 556 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AC004943.3-201ENST00000624116 600 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 AL121594.5-201ENST00000631724 573 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 CASC19-222ENST00000641321 1173 ntBASIC5.57□□□□□ -1.52
DKK3Q9UBP4 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
DKK3Q9UBP4 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms