Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS35Q96QK1 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS35Q96QK1 RNU6-819P-201ENST00000364116 107 ntBASIC4.81□□□□□ -1.64
VPS35Q96QK1 RNA5SP87-201ENST00000384155 118 ntBASIC4.81□□□□□ -1.64
VPS35Q96QK1 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS35Q96QK1 DHFRP5-201ENST00000406944 564 ntBASIC4.81□□□□□ -1.64
VPS35Q96QK1 RNA5SP113-201ENST00000410486 84 ntBASIC4.81□□□□□ -1.64
VPS35Q96QK1 AC004690.1-201ENST00000418216 328 ntBASIC4.81□□□□□ -1.64
VPS35Q96QK1 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 AC104837.2-201ENST00000427236 424 ntBASIC4.81□□□□□ -1.64
VPS35Q96QK1 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 AC073587.1-201ENST00000447093 876 ntBASIC4.81□□□□□ -1.64
VPS35Q96QK1 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 AL591473.1-201ENST00000464297 313 ntBASIC4.81□□□□□ -1.64
VPS35Q96QK1 AC092324.1-201ENST00000468671 324 ntBASIC4.81□□□□□ -1.64
VPS35Q96QK1 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 AC037198.2-201ENST00000478845 733 ntBASIC4.81□□□□□ -1.64
VPS35Q96QK1 RN7SL558P-201ENST00000497468 299 ntBASIC4.81□□□□□ -1.64
VPS35Q96QK1 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS35Q96QK1 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 BNIP3P1-201ENST00000547295 580 ntBASIC4.81□□□□□ -1.64
VPS35Q96QK1 AL049839.1-201ENST00000556151 657 ntBASIC4.81□□□□□ -1.64
VPS35Q96QK1 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 AL121932.1-201ENST00000605542 214 ntBASIC4.81□□□□□ -1.64
VPS35Q96QK1 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 AL133370.2-201ENST00000619934 439 ntBASIC4.81□□□□□ -1.64
VPS35Q96QK1 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS35Q96QK1 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS35Q96QK1 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS35Q96QK1 AC104118.1-201ENST00000607625 1589 ntBASIC4.81□□□□□ -1.64
VPS35Q96QK1 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS35Q96QK1 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS35Q96QK1 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS35Q96QK1 OR51C1P-202ENST00000641159 1444 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS35Q96QK1 AL592182.3-201ENST00000642132 3304 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS35Q96QK1 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS35Q96QK1 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS35Q96QK1 SNORD65-201ENST00000391079 73 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 U3.30-201ENST00000391308 210 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 AL034403.1-201ENST00000399414 885 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 AL136131.1-201ENST00000406079 803 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 CYCSP10-201ENST00000417973 294 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC244453.4-201ENST00000419150 388 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 LINC00993-201ENST00000420453 540 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC234781.3-201ENST00000452540 973 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 RPS5P7-201ENST00000456664 608 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 PANCR-201ENST00000503456 493 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 SNORA70.17-201ENST00000516449 133 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC005868.1-201ENST00000536421 331 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 MIR3667-201ENST00000581025 74 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 AL031320.1-201ENST00000604177 357 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC133552.5-201ENST00000604266 540 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC024940.4-201ENST00000605507 246 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC019131.2-201ENST00000609071 870 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 AL022401.1-201ENST00000619498 108 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC021106.3-201ENST00000623925 531 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC006453.5-201ENST00000636451 619 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS35Q96QK1 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS35Q96QK1 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS35Q96QK1 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS35Q96QK1 NCLP2-201ENST00000416078 1462 ntBASIC4.8□□□□□ -1.64
VPS35Q96QK1 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS35Q96QK1 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS35Q96QK1 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS35Q96QK1 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS35Q96QK1 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms