Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 RNA5SP75-201ENST00000516841 111 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC022616.6-201ENST00000520479 119 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AP001007.2-201ENST00000525429 593 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AP006587.5-201ENST00000532033 739 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC063949.1-201ENST00000552900 865 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC025678.1-201ENST00000567861 338 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 MIR744-201ENST00000578242 98 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC007255.2-201ENST00000604053 631 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 5S_rRNA.23-201ENST00000612086 102 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC104260.1-201ENST00000616660 539 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC139792.3-201ENST00000623525 224 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AP005264.7-201ENST00000625003 745 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC092125.1-201ENST00000562568 1995 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 ARHGEF3-214ENST00000497267 2197 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC097504.1-201ENST00000515103 2415 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 CDKL5-201ENST00000379989 3463 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC005839.1-201ENST00000624148 3213 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 SERPINB8-208ENST00000542677 3192 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC025574.1-201ENST00000554784 1653 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AL354685.2-201ENST00000448218 1447 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 RNU6-28P-201ENST00000362378 107 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 RNU6-181P-201ENST00000363225 107 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 NME1P1-201ENST00000420914 382 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 COX6CP15-201ENST00000426313 211 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 MTCO2P11-201ENST00000431069 680 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC105402.2-201ENST00000438503 358 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC092601.1-201ENST00000444526 383 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 UBE2V1P7-201ENST00000446395 340 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC114755.5-201ENST00000447760 831 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AL445466.1-201ENST00000448432 357 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AL354714.5-201ENST00000450131 590 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 C2orf74-204ENST00000464909 726 ntAPPRIS P2 TSL 2 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC083806.1-201ENST00000468934 316 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC022730.1-201ENST00000473114 568 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 RPS10P28-201ENST00000480396 498 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 RPL21P42-201ENST00000488408 464 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC034222.1-201ENST00000494052 532 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 RPL15P21-201ENST00000495592 567 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 FTH1P24-201ENST00000503502 462 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC021220.1-201ENST00000507445 630 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC025465.4-201ENST00000513422 638 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC046134.1-201ENST00000514454 666 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 RNU6-445P-201ENST00000516949 107 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 OR4R3P-201ENST00000525084 838 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AL591767.3-201ENST00000554632 525 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AL157687.1-201ENST00000554853 619 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 NUDT7-206ENST00000568787 678 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC010761.3-201ENST00000578819 499 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 MIR5682-201ENST00000584864 76 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC110743.1-201ENST00000584870 478 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms