Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AL133412.1-201ENST00000380194 2992 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 SNORA16A-201ENST00000384342 137 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 RNA5SP339-201ENST00000390987 122 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC005522.1-201ENST00000395416 346 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 AL133388.1-201ENST00000404509 287 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 MIR1271-201ENST00000408537 86 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AL355433.1-201ENST00000422804 300 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 FAM96AP1-201ENST00000430879 482 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 GAPDHP25-201ENST00000447061 1001 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC110749.1-201ENST00000462007 357 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 COPS8P2-201ENST00000473228 627 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC091912.1-201ENST00000511351 248 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 RNA5SP497-201ENST00000516081 97 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 SNORA31.13-201ENST00000516624 135 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 IGKV2-36-201ENST00000519999 223 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC022790.1-201ENST00000522872 204 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 LECT2-205ENST00000522943 574 ntTSL 3 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC126177.5-201ENST00000549599 178 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VMP1Q96GC9 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AL512329.2-201ENST00000607350 548 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 AL512624.1-201ENST00000613638 469 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC022106.2-201ENST00000620114 757 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 uc_338.7-201ENST00000621834 124 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 AL356490.1-201ENST00000623079 479 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC136428.4-201ENST00000634254 1155 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC073869.8-201ENST00000641806 335 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VMP1Q96GC9 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VMP1Q96GC9 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AL672167.1-204ENST00000641875 3017 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 AC087190.4-201ENST00000574616 8334 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VMP1Q96GC9 RNA5SP183-201ENST00000362452 119 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 TAF9BP2-201ENST00000400856 499 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 SLC35E1P1-201ENST00000419313 864 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 AC104333.2-201ENST00000422630 192 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 AC012519.1-201ENST00000424588 610 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 ZFAND6P1-201ENST00000434138 605 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 CEACAMP1-201ENST00000434624 1035 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 TPRKBP1-201ENST00000456243 481 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 CABYRP1-201ENST00000465493 1045 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 AC092754.1-201ENST00000472975 479 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 RN7SL177P-201ENST00000476596 299 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VMP1Q96GC9 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 AC021106.1-201ENST00000509020 1058 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 IGLV2-28-201ENST00000520681 304 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VMP1Q96GC9 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.03□□□□□ -1.6
VMP1Q96GC9 OR4U1P-201ENST00000554958 912 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 AC004825.1-201ENST00000555068 586 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 CKS1BP1-201ENST00000555221 240 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 AC006349.1-201ENST00000555526 235 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 CSNK1A1P1-202ENST00000563423 981 ntBASIC5.03□□□□□ -1.6
VMP1Q96GC9 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms