Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RHOT1P3-201ENST00000436571 331 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA3P55318 NDUFA5P8-201ENST00000449019 346 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 EIF4A1P11-201ENST00000451239 222 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 AL121877.1-201ENST00000453704 622 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC3.43□□□□□ -1.86
FOXA3P55318 AC092905.1-201ENST00000467527 949 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC3.43□□□□□ -1.86
FOXA3P55318 RPS6P4-201ENST00000494693 758 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 RN7SL466P-201ENST00000497546 295 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 MRPS33P2-201ENST00000507850 322 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 HNRNPKP5-201ENST00000515300 253 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 RNU1-6P-201ENST00000516290 144 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 SCARNA21.2-201ENST00000516600 166 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC3.43□□□□□ -1.86
FOXA3P55318 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC3.43□□□□□ -1.86
FOXA3P55318 BMPR1APS2-201ENST00000527904 1012 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.43□□□□□ -1.86
FOXA3P55318 AC022404.1-201ENST00000555320 273 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC3.43□□□□□ -1.86
FOXA3P55318 MIR4271-201ENST00000582451 67 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC3.43□□□□□ -1.86
FOXA3P55318 AC011447.4-201ENST00000587562 111 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC3.43□□□□□ -1.86
FOXA3P55318 AC010201.1-201ENST00000605051 540 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 AP001521.2-201ENST00000608772 546 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 AC244100.4-201ENST00000617747 388 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 MIR6715B-201ENST00000637172 77 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
FOXA3P55318 NOL8P1-201ENST00000508336 3529 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 AL356489.2-201ENST00000566968 3528 ntBASIC3.43□□□□□ -1.86
FOXA3P55318 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA3P55318 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA3P55318 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXA3P55318 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA3P55318 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA3P55318 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA3P55318 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.42□□□□□ -1.86
FOXA3P55318 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA3P55318 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC3.42□□□□□ -1.86
FOXA3P55318 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC3.42□□□□□ -1.86
FOXA3P55318 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
FOXA3P55318 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.42□□□□□ -1.86
FOXA3P55318 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
FOXA3P55318 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
FOXA3P55318 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC3.42□□□□□ -1.86
FOXA3P55318 SNORA74A-201ENST00000364089 198 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC3.42□□□□□ -1.86
FOXA3P55318 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA3P55318 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC3.42□□□□□ -1.86
FOXA3P55318 FCF1P5-201ENST00000406490 482 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC3.42□□□□□ -1.86
FOXA3P55318 AC114755.2-201ENST00000413520 361 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 GTF2IP5-201ENST00000414608 731 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.42□□□□□ -1.86
FOXA3P55318 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC3.42□□□□□ -1.86
FOXA3P55318 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC3.42□□□□□ -1.86
FOXA3P55318 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.42□□□□□ -1.86
FOXA3P55318 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC3.42□□□□□ -1.86
FOXA3P55318 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC3.42□□□□□ -1.86
FOXA3P55318 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC3.42□□□□□ -1.86
FOXA3P55318 GSTA7P-201ENST00000438425 448 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC3.42□□□□□ -1.86
FOXA3P55318 HMGN1P2-201ENST00000445197 310 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 AC104306.1-201ENST00000449702 371 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 NDUFS5P3-201ENST00000450668 321 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.42□□□□□ -1.86
FOXA3P55318 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.42□□□□□ -1.86
FOXA3P55318 AL133244.1-201ENST00000456007 258 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA3P55318 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC3.42□□□□□ -1.86
FOXA3P55318 SCARNA10-201ENST00000459255 330 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 RN7SL319P-201ENST00000480656 221 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 RN7SL727P-201ENST00000482164 296 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC3.42□□□□□ -1.86
FOXA3P55318 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC3.42□□□□□ -1.86
FOXA3P55318 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC3.42□□□□□ -1.86
FOXA3P55318 BX510359.5-201ENST00000515651 304 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 IGHVII-44-2-201ENST00000517728 250 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 AC090281.1-201ENST00000523019 276 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC3.42□□□□□ -1.86
FOXA3P55318 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC3.42□□□□□ -1.86
FOXA3P55318 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
FOXA3P55318 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.42□□□□□ -1.86
FOXA3P55318 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC3.42□□□□□ -1.86
FOXA3P55318 AL031666.3-201ENST00000609320 1006 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 RNA5SP440-201ENST00000612665 119 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA3P55318 AL627230.1-201ENST00000613077 211 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 AC026368.1-201ENST00000614934 690 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.42□□□□□ -1.86
FOXA3P55318 AC067852.7-201ENST00000623270 535 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC3.42□□□□□ -1.86
FOXA3P55318 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
FOXA3P55318 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA3P55318 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA3P55318 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
FOXA3P55318 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC3.42□□□□□ -1.86
FOXA3P55318 AC135352.1-201ENST00000506173 1418 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms