Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.97□□□□□ -1.61
HNF4AP41235 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.97□□□□□ -1.61
HNF4AP41235 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.97□□□□□ -1.61
HNF4AP41235 AC126915.2-201ENST00000610957 190 ntBASIC4.97□□□□□ -1.61
HNF4AP41235 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HNF4AP41235 AP000648.2-201ENST00000624182 404 ntBASIC4.97□□□□□ -1.61
HNF4AP41235 AC106730.3-201ENST00000624568 641 ntBASIC4.97□□□□□ -1.61
HNF4AP41235 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC4.97□□□□□ -1.61
HNF4AP41235 AC004808.2-201ENST00000627965 773 ntBASIC4.97□□□□□ -1.61
HNF4AP41235 HPVC1-201ENST00000629899 1198 ntBASIC4.97□□□□□ -1.61
HNF4AP41235 AC006453.5-201ENST00000636451 619 ntBASIC4.97□□□□□ -1.61
HNF4AP41235 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
HNF4AP41235 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HNF4AP41235 AL592437.2-201ENST00000421655 2434 ntBASIC4.97□□□□□ -1.61
HNF4AP41235 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
HNF4AP41235 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HNF4AP41235 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
HNF4AP41235 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
HNF4AP41235 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
HNF4AP41235 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.61
HNF4AP41235 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
HNF4AP41235 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.61
HNF4AP41235 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.96□□□□□ -1.61
HNF4AP41235 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
HNF4AP41235 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
HNF4AP41235 LINC01109-201ENST00000603837 3081 ntBASIC4.96□□□□□ -1.61
HNF4AP41235 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HNF4AP41235 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.96□□□□□ -1.62
HNF4AP41235 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.96□□□□□ -1.62
HNF4AP41235 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HNF4AP41235 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
HNF4AP41235 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HNF4AP41235 RN7SKP113-201ENST00000363891 295 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HNF4AP41235 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.96□□□□□ -1.62
HNF4AP41235 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.96□□□□□ -1.62
HNF4AP41235 RNU6-317P-201ENST00000384031 107 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 MIR223-201ENST00000385204 110 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 EI24P4-201ENST00000423683 1078 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 SEC63P1-201ENST00000425785 1258 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.96□□□□□ -1.62
HNF4AP41235 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.96□□□□□ -1.62
HNF4AP41235 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC4.96□□□□□ -1.62
HNF4AP41235 MED6P1-201ENST00000439659 713 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC4.96□□□□□ -1.62
HNF4AP41235 EEF1A1P1-201ENST00000447052 739 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 TPMTP4-201ENST00000450749 678 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC4.96□□□□□ -1.62
HNF4AP41235 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HNF4AP41235 AC110749.1-201ENST00000462007 357 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 OR52A4P-201ENST00000472867 958 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 COPS8P2-201ENST00000473228 627 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.96□□□□□ -1.62
HNF4AP41235 RN7SL629P-201ENST00000489622 285 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.96□□□□□ -1.62
HNF4AP41235 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HNF4AP41235 AC025459.1-201ENST00000504072 156 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.96□□□□□ -1.62
HNF4AP41235 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.96□□□□□ -1.62
HNF4AP41235 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC4.96□□□□□ -1.62
HNF4AP41235 AC134349.2-201ENST00000535136 910 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HNF4AP41235 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC4.96□□□□□ -1.62
HNF4AP41235 AL109741.3-201ENST00000561748 592 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC4.96□□□□□ -1.62
HNF4AP41235 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.96□□□□□ -1.62
HNF4AP41235 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.96□□□□□ -1.62
HNF4AP41235 AC095055.1-201ENST00000603472 1113 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 AC025175.1-201ENST00000606482 759 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 AC017076.1-201ENST00000607613 578 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 AL096803.3-201ENST00000609032 532 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.96□□□□□ -1.62
HNF4AP41235 AP000894.4-201ENST00000610185 483 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 OR2L1P-202ENST00000641567 1023 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 AL163152.1-201ENST00000642001 374 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.96□□□□□ -1.62
HNF4AP41235 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HNF4AP41235 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.96□□□□□ -1.62
HNF4AP41235 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.96□□□□□ -1.62
HNF4AP41235 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HNF4AP41235 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
HNF4AP41235 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
HNF4AP41235 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HNF4AP41235 AC114947.2-201ENST00000565748 2125 ntBASIC4.96□□□□□ -1.62
HNF4AP41235 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HNF4AP41235 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.96□□□□□ -1.62
HNF4AP41235 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HNF4AP41235 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.96□□□□□ -1.62
HNF4AP41235 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HNF4AP41235 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HNF4AP41235 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HNF4AP41235 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HNF4AP41235 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
HNF4AP41235 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HNF4AP41235 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
HNF4AP41235 RPL23P2-201ENST00000320371 421 ntBASIC4.95□□□□□ -1.62
HNF4AP41235 IGKV7-3-201ENST00000357453 298 ntBASIC4.95□□□□□ -1.62
HNF4AP41235 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.95□□□□□ -1.62
HNF4AP41235 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms