Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC5.33□□□□□ -1.56
COL4A1P02462 AC245389.1-201ENST00000605141 529 ntBASIC5.33□□□□□ -1.56
COL4A1P02462 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL4A1P02462 IQCB2P-201ENST00000401788 1633 ntBASIC5.33□□□□□ -1.56
COL4A1P02462 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL4A1P02462 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL4A1P02462 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.33□□□□□ -1.56
COL4A1P02462 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL4A1P02462 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A1P02462 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC5.32□□□□□ -1.56
COL4A1P02462 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
COL4A1P02462 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A1P02462 DNM1P47-203ENST00000571780 12667 ntBASIC5.32□□□□□ -1.56
COL4A1P02462 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A1P02462 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A1P02462 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A1P02462 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A1P02462 RNA5SP124-201ENST00000362739 110 ntBASIC5.32□□□□□ -1.56
COL4A1P02462 RNU1-64P-201ENST00000365443 163 ntBASIC5.32□□□□□ -1.56
COL4A1P02462 RNU6ATAC34P-201ENST00000408879 121 ntBASIC5.32□□□□□ -1.56
COL4A1P02462 RPS29P7-201ENST00000439662 171 ntBASIC5.32□□□□□ -1.56
COL4A1P02462 SAP18P1-201ENST00000512058 390 ntBASIC5.32□□□□□ -1.56
COL4A1P02462 RNA5SP303-201ENST00000516192 130 ntBASIC5.32□□□□□ -1.56
COL4A1P02462 RNU1-45P-201ENST00000517191 141 ntBASIC5.32□□□□□ -1.56
COL4A1P02462 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.32□□□□□ -1.56
COL4A1P02462 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.32□□□□□ -1.56
COL4A1P02462 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A1P02462 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A1P02462 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
COL4A1P02462 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
COL4A1P02462 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A1P02462 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.32□□□□□ -1.56
COL4A1P02462 AL672167.1-205ENST00000641112 3080 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC5.31□□□□□ -1.56
COL4A1P02462 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A1P02462 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A1P02462 AL359922.3-201ENST00000624779 1670 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 RNA5SP307-201ENST00000362863 116 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 AL356968.2-201ENST00000412769 1257 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 AC009237.10-201ENST00000414112 510 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 AL590806.1-201ENST00000415818 853 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC5.31□□□□□ -1.56
COL4A1P02462 OR2AH1P-201ENST00000425717 928 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 PPM1AP1-201ENST00000502740 1135 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.31□□□□□ -1.56
COL4A1P02462 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.31□□□□□ -1.56
COL4A1P02462 OR8R1P-201ENST00000543943 764 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A1P02462 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.31□□□□□ -1.56
COL4A1P02462 AC006133.1-201ENST00000617106 264 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 AC007546.2-201ENST00000623996 360 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A1P02462 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
COL4A1P02462 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.31□□□□□ -1.56
COL4A1P02462 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
COL4A1P02462 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A1P02462 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
COL4A1P02462 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A1P02462 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A1P02462 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A1P02462 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A1P02462 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.31□□□□□ -1.56
COL4A1P02462 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A1P02462 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A1P02462 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
COL4A1P02462 AL359837.1-201ENST00000381357 287 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 RPL6P29-201ENST00000414863 865 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.31□□□□□ -1.56
COL4A1P02462 AC128716.1-201ENST00000475129 166 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 CR383656.1-201ENST00000484916 377 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 VN1R105P-201ENST00000486595 910 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 AL132838.2-201ENST00000492041 314 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 RN7SL604P-201ENST00000492589 296 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 ATP1B1P1-201ENST00000509767 915 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.31□□□□□ -1.56
COL4A1P02462 RPL23AP97-201ENST00000568955 471 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 AC023043.4-201ENST00000612081 449 ntBASIC5.31□□□□□ -1.56
COL4A1P02462 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.3□□□□□ -1.56
COL4A1P02462 THAP12P5-201ENST00000405864 2275 ntBASIC5.3□□□□□ -1.56
COL4A1P02462 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
COL4A1P02462 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL4A1P02462 RLIMP1-201ENST00000339626 1680 ntBASIC5.3□□□□□ -1.56
COL4A1P02462 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL4A1P02462 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
COL4A1P02462 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL4A1P02462 AC105074.1-201ENST00000623380 3095 ntBASIC5.3□□□□□ -1.56
COL4A1P02462 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL4A1P02462 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL4A1P02462 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC5.3□□□□□ -1.56
COL4A1P02462 MIR23B-201ENST00000384832 97 ntBASIC5.3□□□□□ -1.56
COL4A1P02462 RCC2P2-201ENST00000422174 918 ntBASIC5.3□□□□□ -1.56
COL4A1P02462 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL4A1P02462 NMNAT1P2-201ENST00000435192 860 ntBASIC5.3□□□□□ -1.56
COL4A1P02462 ARAFP2-201ENST00000440565 559 ntBASIC5.3□□□□□ -1.56
COL4A1P02462 Z95327.1-201ENST00000446082 482 ntBASIC5.3□□□□□ -1.56
COL4A1P02462 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC5.3□□□□□ -1.56
COL4A1P02462 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.3□□□□□ -1.56
COL4A1P02462 DDX39BP2-208ENST00000453923 258 ntBASIC5.3□□□□□ -1.56
COL4A1P02462 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 154.2 ms