Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 UGT2B26P-201ENST00000508672 1613 ntBASIC1.44□□□□□ -2.18
SYNE1Q8NF91 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 OR2A3P-201ENST00000493774 953 ntBASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AC073073.1-201ENST00000493920 463 ntBASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 RPS24P16-201ENST00000497294 392 ntBASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AC093524.1-201ENST00000564266 1094 ntBASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AL139254.3-201ENST00000641097 674 ntBASIC1.44□□□□□ -2.18
SYNE1Q8NF91 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 RNA5SP432-201ENST00000362480 116 ntBASIC1.44□□□□□ -2.18
SYNE1Q8NF91 SNORA70F-201ENST00000384142 135 ntBASIC1.44□□□□□ -2.18
SYNE1Q8NF91 RNA5SP345-201ENST00000410646 108 ntBASIC1.44□□□□□ -2.18
SYNE1Q8NF91 UQCRBP1-201ENST00000421129 336 ntBASIC1.44□□□□□ -2.18
SYNE1Q8NF91 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 DHFRP3-201ENST00000455595 559 ntBASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 CDV3-208ENST00000511392 554 ntTSL 5 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 SNORA73.1-201ENST00000363107 205 ntBASIC1.44□□□□□ -2.18
SYNE1Q8NF91 IL6-206ENST00000407492 926 ntTSL 3 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 NUTF2P3-201ENST00000448540 384 ntBASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AC093720.1-201ENST00000505681 714 ntBASIC1.44□□□□□ -2.18
SYNE1Q8NF91 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 PYM1-205ENST00000547925 499 ntTSL 3 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AC105129.1-201ENST00000560250 297 ntBASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AC011755.1-201ENST00000623763 2049 ntBASIC1.44□□□□□ -2.18
SYNE1Q8NF91 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
SYNE1Q8NF91 CASC19-255ENST00000641733 1385 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 MTCO1P15-201ENST00000529569 1526 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 GAS5-208ENST00000425771 242 ntTSL 3 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 MRPL35P2-201ENST00000448009 511 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC021193.1-201ENST00000511607 420 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 NDUFB4P11-201ENST00000560510 395 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 MIR4444-1-201ENST00000581696 74 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 MIR4444-2-201ENST00000584390 74 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 SNORD46.1-201ENST00000364139 104 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 SCARNA10-201ENST00000459255 330 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC093840.1-201ENST00000511599 336 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC1.43□□□□□ -2.18
SYNE1Q8NF91 SNORA67.7-201ENST00000516664 135 ntBASIC1.43□□□□□ -2.18
SYNE1Q8NF91 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms