Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 OR5AC4P-202ENST00000642086 985 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 TCP11X1-202ENST00000622971 1372 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AL450345.1-202ENST00000605741 3881 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 SNORA70.2-201ENST00000364506 135 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 RNA5SP241-201ENST00000391326 114 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 RPL26P37-201ENST00000411983 438 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 P2RY10P2-201ENST00000416730 913 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AF186996.5-201ENST00000418098 904 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AC092570.3-201ENST00000420113 693 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AC099336.2-201ENST00000422457 254 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 RPS26P47-201ENST00000427219 348 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AC009238.2-201ENST00000431026 355 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 BX842559.2-201ENST00000451418 605 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AC099560.2-201ENST00000457554 255 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 GCSHP4-201ENST00000538792 439 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AC074029.2-201ENST00000551045 634 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AL359219.2-201ENST00000555184 348 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AC068714.1-201ENST00000559623 800 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 ATP5J2P6-201ENST00000565203 266 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AC104687.2-201ENST00000604442 342 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AC084036.1-201ENST00000609190 508 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AC138965.3-201ENST00000623875 498 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 AC119674.1-220ENST00000641502 1048 ntBASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.06□□□□□ -1.6
HDDC3Q8N4P3 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 RN7SKP224-201ENST00000364140 325 ntBASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 RNU6-152P-201ENST00000384037 107 ntBASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 SNORA48.4-201ENST00000391089 134 ntBASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 GLULP6-201ENST00000399502 913 ntBASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 CCDC75P1-201ENST00000469247 791 ntBASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 MRPS33P2-201ENST00000507850 322 ntBASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 RN7SL290P-201ENST00000578661 300 ntBASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 EIF1P5-201ENST00000585002 234 ntBASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 AC083809.1-201ENST00000615051 472 ntBASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 AC119674.1-212ENST00000641155 993 ntBASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.05□□□□□ -1.6
HDDC3Q8N4P3 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms