Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TAF1L-201ENST00000242310 6216 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
COL6A3P12111 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A3P12111 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.53□□□□□ -1.68
COL6A3P12111 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC4.53□□□□□ -1.68
COL6A3P12111 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A3P12111 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
COL6A3P12111 UBE2V1P2-201ENST00000397758 440 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 RPS26P38-201ENST00000414476 348 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 QRSL1P2-201ENST00000418582 964 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.53□□□□□ -1.68
COL6A3P12111 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.53□□□□□ -1.68
COL6A3P12111 AC093853.1-201ENST00000515689 483 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 AP001804.1-201ENST00000526868 919 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.53□□□□□ -1.68
COL6A3P12111 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC4.53□□□□□ -1.68
COL6A3P12111 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.53□□□□□ -1.68
COL6A3P12111 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.53□□□□□ -1.68
COL6A3P12111 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.53□□□□□ -1.68
COL6A3P12111 AC006065.6-201ENST00000625201 545 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A3P12111 AL442128.2-201ENST00000620246 1824 ntBASIC4.53□□□□□ -1.69
COL6A3P12111 TRPS1-212ENST00000640765 9514 ntTSL 2 BASIC4.53□□□□□ -1.69
COL6A3P12111 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.52□□□□□ -1.69
COL6A3P12111 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.52□□□□□ -1.69
COL6A3P12111 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC4.52□□□□□ -1.69
COL6A3P12111 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A3P12111 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A3P12111 GAPDHP14-201ENST00000450472 937 ntBASIC4.52□□□□□ -1.69
COL6A3P12111 AC069306.1-201ENST00000507006 843 ntBASIC4.52□□□□□ -1.69
COL6A3P12111 RNU6-352P-201ENST00000516908 107 ntBASIC4.52□□□□□ -1.69
COL6A3P12111 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.52□□□□□ -1.69
COL6A3P12111 BPIFA4P-203ENST00000603168 689 ntBASIC4.52□□□□□ -1.69
COL6A3P12111 AC010632.3-201ENST00000611377 369 ntBASIC4.52□□□□□ -1.69
COL6A3P12111 AC015712.7-201ENST00000615211 635 ntBASIC4.52□□□□□ -1.69
COL6A3P12111 AC009120.7-201ENST00000623452 780 ntBASIC4.52□□□□□ -1.69
COL6A3P12111 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.52□□□□□ -1.69
COL6A3P12111 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC4.52□□□□□ -1.69
COL6A3P12111 SHPRH-203ENST00000367505 7201 ntAPPRIS P2 TSL 5 BASIC4.52□□□□□ -1.69
COL6A3P12111 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
COL6A3P12111 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A3P12111 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A3P12111 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC4.52□□□□□ -1.69
COL6A3P12111 CR1-206ENST00000400960 6959 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A3P12111 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC4.52□□□□□ -1.69
COL6A3P12111 SNORA48.5-201ENST00000391143 135 ntBASIC4.52□□□□□ -1.69
COL6A3P12111 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC4.52□□□□□ -1.69
COL6A3P12111 OR4F13P-201ENST00000428478 931 ntBASIC4.52□□□□□ -1.69
COL6A3P12111 AL451139.1-201ENST00000434718 346 ntBASIC4.52□□□□□ -1.69
COL6A3P12111 RNA5SP73-201ENST00000516744 108 ntBASIC4.52□□□□□ -1.69
COL6A3P12111 MIR4301-201ENST00000577203 66 ntBASIC4.52□□□□□ -1.69
COL6A3P12111 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.52□□□□□ -1.69
COL6A3P12111 AC079587.1-201ENST00000603846 277 ntBASIC4.52□□□□□ -1.69
COL6A3P12111 U3.45-201ENST00000607547 219 ntBASIC4.52□□□□□ -1.69
COL6A3P12111 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
COL6A3P12111 ALMS1-204ENST00000484298 12595 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A3P12111 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC4.52□□□□□ -1.69
COL6A3P12111 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A3P12111 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A3P12111 CASC19-261ENST00000641853 1638 ntBASIC4.52□□□□□ -1.69
COL6A3P12111 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A3P12111 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A3P12111 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A3P12111 CTSL3P-202ENST00000412179 788 ntBASIC4.51□□□□□ -1.69
COL6A3P12111 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A3P12111 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.51□□□□□ -1.69
COL6A3P12111 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.51□□□□□ -1.69
COL6A3P12111 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.51□□□□□ -1.69
COL6A3P12111 AC084824.2-201ENST00000548906 345 ntBASIC4.51□□□□□ -1.69
COL6A3P12111 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A3P12111 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
COL6A3P12111 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.51□□□□□ -1.69
COL6A3P12111 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A3P12111 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A3P12111 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.51□□□□□ -1.69
COL6A3P12111 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC4.51□□□□□ -1.69
COL6A3P12111 AC022893.2-201ENST00000564832 3296 ntBASIC4.51□□□□□ -1.69
COL6A3P12111 RTTN-222ENST00000640769 8088 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
COL6A3P12111 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.51□□□□□ -1.69
COL6A3P12111 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
COL6A3P12111 ENSAP1-201ENST00000392855 326 ntBASIC4.51□□□□□ -1.69
COL6A3P12111 AC016559.2-201ENST00000510759 359 ntBASIC4.51□□□□□ -1.69
COL6A3P12111 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.51□□□□□ -1.69
COL6A3P12111 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
COL6A3P12111 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A3P12111 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC4.51□□□□□ -1.69
COL6A3P12111 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A3P12111 AC007618.1-201ENST00000366455 732 ntBASIC4.51□□□□□ -1.69
COL6A3P12111 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A3P12111 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC4.51□□□□□ -1.69
COL6A3P12111 RNU6-213P-201ENST00000384051 104 ntBASIC4.51□□□□□ -1.69
COL6A3P12111 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.51□□□□□ -1.69
COL6A3P12111 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.51□□□□□ -1.69
COL6A3P12111 RPS7P15-201ENST00000415804 584 ntBASIC4.51□□□□□ -1.69
COL6A3P12111 AL590609.2-201ENST00000421430 368 ntBASIC4.51□□□□□ -1.69
COL6A3P12111 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A3P12111 COX6CP13-201ENST00000428703 226 ntBASIC4.51□□□□□ -1.69
COL6A3P12111 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.51□□□□□ -1.69
COL6A3P12111 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A3P12111 AC020893.1-201ENST00000502452 580 ntBASIC4.51□□□□□ -1.69
COL6A3P12111 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms