Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 BMPR1APS1-201ENST00000403332 1598 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 SEMA6A-210ENST00000510263 3292 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AC009690.2-201ENST00000570175 3148 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 GUCY2F-201ENST00000218006 3714 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 LINC01697-202ENST00000426534 1764 ntTSL 2 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 LGI1-211ENST00000630047 1751 ntTSL 2 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 SLC16A4-203ENST00000437429 2372 ntTSL 2 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 RFX5-201ENST00000290524 3576 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 CD101-202ENST00000369470 3324 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 SLC13A3-202ENST00000290317 3994 ntTSL 5 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 OR51E2-201ENST00000396950 2781 ntAPPRIS P1 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AC116366.1-201ENST00000443093 3730 ntTSL 5 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 STX2-203ENST00000392373 2151 ntAPPRIS P4 TSL 5 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 SLC8A3-208ENST00000533541 3409 ntTSL 2 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AQP4-AS1-201ENST00000568797 3119 ntTSL 2 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AP2B1-213ENST00000612116 3483 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 RNU6-545P-201ENST00000362681 104 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 Y_RNA.222-201ENST00000364264 102 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 C9orf92-202ENST00000380685 379 ntAPPRIS ALT2 TSL 2 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 CASP8-208ENST00000392266 1283 ntTSL 2 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AL360182.1-201ENST00000397433 468 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AL359715.1-201ENST00000404330 555 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 RPSAP72-201ENST00000407020 358 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 RNU4-25P-201ENST00000410569 230 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 RNA5SP345-201ENST00000410646 108 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 PGAM1P3-201ENST00000420790 565 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AL365295.1-204ENST00000425648 553 ntTSL 4 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 PTCSC2-201ENST00000430058 204 ntTSL 2 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AL590682.1-201ENST00000437248 344 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AL138799.3-201ENST00000438968 350 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 CD59-206ENST00000445143 825 ntAPPRIS P2 TSL 3 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 ZNF385D-AS2-202ENST00000448980 370 ntTSL 3 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 RNU7-136P-201ENST00000458819 69 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 RPL7P43-201ENST00000478876 753 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 SUMO2P4-201ENST00000504193 276 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 PSD2-AS1-201ENST00000515306 412 ntTSL 3 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 RNU6-1212P-201ENST00000517023 104 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AC107934.1-201ENST00000522215 217 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 SLN-202ENST00000525934 436 ntAPPRIS P1 TSL 3 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 FXYD2-206ENST00000532119 562 ntAPPRIS P1 TSL 3 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AP003032.2-201ENST00000533697 686 ntTSL 3 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AP002770.2-201ENST00000543613 532 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 KDM1B-203ENST00000546309 496 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AL118558.2-201ENST00000556294 238 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AC099508.2-201ENST00000563098 510 ntTSL 3 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AC009118.1-201ENST00000566019 374 ntTSL 2 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AF001548.1-201ENST00000577048 550 ntTSL 4 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 MIR4424-201ENST00000585257 86 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 NDUFA3P1-201ENST00000588007 252 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AC011891.2-201ENST00000604949 397 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 MIR6745-201ENST00000612694 127 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 NUDT13-208ENST00000617744 928 ntTSL 5 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AL109954.1-201ENST00000619495 557 ntTSL 4 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 CR381572.1-201ENST00000625098 102 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 Metazoa_SRP.212-201ENST00000636778 248 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 OAZ3-211ENST00000639906 708 ntAPPRIS P2 TSL 5 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 HCG18-244ENST00000602516 2890 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 NACA-216ENST00000550952 2922 ntTSL 2 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AL139805.2-201ENST00000455305 2433 ntBASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 AURKA-205ENST00000395911 2145 ntAPPRIS P1 TSL 5 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 LINC01588-202ENST00000528300 3208 ntTSL 2 BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 TBX5-AS1-201ENST00000528549 3620 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 NKRF-201ENST00000304449 3269 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
VPS9D1Q9Y2B5 HAVCR2-201ENST00000307851 2907 ntAPPRIS P2 TSL 1 (best) BASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 OR10W1-201ENST00000395079 1469 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 AL049555.1-201ENST00000562834 1933 ntBASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 PIAS1-201ENST00000249636 8115 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 CASK-204ENST00000378166 3123 ntAPPRIS P3 TSL 1 (best) BASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 DLD-205ENST00000440410 1993 ntTSL 2 BASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 LNX1-202ENST00000306888 3757 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 OR56A5-201ENST00000340110 738 ntBASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 BSPH1-201ENST00000344839 654 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 RNU6-552P-201ENST00000362869 119 ntBASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 RN7SKP50-201ENST00000364694 315 ntBASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 Y_RNA.376-201ENST00000365638 108 ntBASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 ZNFX1-202ENST00000371752 7212 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 RNU6-1027P-201ENST00000383998 107 ntBASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 PHBP1-201ENST00000392260 808 ntBASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 RAN-201ENST00000392367 780 ntTSL 5 BASIC7.68□□□□□ -1.18
VPS9D1Q9Y2B5 RNU2-23P-201ENST00000410545 195 ntBASIC7.68□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms