Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
PDZRN3Q9UPQ7 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
PDZRN3Q9UPQ7 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
PDZRN3Q9UPQ7 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
PDZRN3Q9UPQ7 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
PDZRN3Q9UPQ7 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC8.4□□□□□ -1.07
PDZRN3Q9UPQ7 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC8.4□□□□□ -1.07
PDZRN3Q9UPQ7 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
PDZRN3Q9UPQ7 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
PDZRN3Q9UPQ7 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AC104966.1-201ENST00000467010 1464 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 DCAF13P1-201ENST00000495256 1330 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AC025809.2-201ENST00000625085 1802 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 Y_RNA.193-201ENST00000363979 102 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 RNU6-1251P-201ENST00000364502 107 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 SNORD81.2-201ENST00000365153 76 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 RNA5SP77-201ENST00000365394 120 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 MTCO3P40-201ENST00000392516 676 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 CYCSP17-201ENST00000407870 315 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AL139421.1-201ENST00000423010 169 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AC239367.3-201ENST00000428996 814 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AL731563.1-201ENST00000442202 214 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AC140076.1-201ENST00000449897 361 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 VDAC2P4-201ENST00000452925 711 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AL139156.3-201ENST00000454802 394 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 RFESD-208ENST00000513950 464 ntTSL 5 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 MYL2-203ENST00000548438 664 ntTSL 3 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 RN7SL404P-201ENST00000582421 281 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AC067852.5-201ENST00000589299 310 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AC093635.1-201ENST00000609028 555 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 AL359880.1-201ENST00000621879 266 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 MIR3662-201ENST00000637030 95 ntBASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 GDA-209ENST00000545168 5362 ntTSL 2 BASIC8.39□□□□□ -1.07
PDZRN3Q9UPQ7 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 MTND5P33-201ENST00000571250 1450 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 SLC9B1P1-201ENST00000331172 1337 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 Y_RNA.128-201ENST00000363391 112 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 Y_RNA.202-201ENST00000364083 110 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 SNORA4.3-201ENST00000365564 137 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 LCN1P2-201ENST00000372030 223 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 U3.52-201ENST00000384034 216 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 SNORA19-201ENST00000384737 128 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 AL035419.1-201ENST00000397037 564 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 MIR1302-3-201ENST00000408128 138 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 RN7SKP56-201ENST00000410513 331 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 AC009161.1-201ENST00000417306 376 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 PDCL2P1-201ENST00000419302 352 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 AC093084.1-201ENST00000424233 687 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 MTCO1P20-201ENST00000425366 358 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 AC236972.2-201ENST00000434979 310 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 HMGB1P7-201ENST00000450921 612 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 AL121877.1-201ENST00000453704 622 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 AL513533.1-201ENST00000453728 415 ntBASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC8.38□□□□□ -1.07
PDZRN3Q9UPQ7 SNORA58-201ENST00000505219 137 ntBASIC8.38□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms