Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC5.41□□□□□ -1.54
HDAC4P56524 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC5.41□□□□□ -1.54
HDAC4P56524 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC5.41□□□□□ -1.54
HDAC4P56524 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.41□□□□□ -1.54
HDAC4P56524 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.41□□□□□ -1.54
HDAC4P56524 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC5.41□□□□□ -1.54
HDAC4P56524 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC5.41□□□□□ -1.54
HDAC4P56524 AC104072.1-201ENST00000568817 668 ntBASIC5.41□□□□□ -1.54
HDAC4P56524 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.41□□□□□ -1.54
HDAC4P56524 OR1AB1P-201ENST00000585564 761 ntBASIC5.41□□□□□ -1.54
HDAC4P56524 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC5.41□□□□□ -1.54
HDAC4P56524 AC068020.1-201ENST00000594215 661 ntBASIC5.41□□□□□ -1.54
HDAC4P56524 AC130352.1-201ENST00000602979 661 ntBASIC5.41□□□□□ -1.54
HDAC4P56524 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.41□□□□□ -1.54
HDAC4P56524 AP005432.2-201ENST00000608162 586 ntBASIC5.41□□□□□ -1.54
HDAC4P56524 AC018645.2-201ENST00000609151 472 ntBASIC5.41□□□□□ -1.54
HDAC4P56524 AC104763.3-201ENST00000613765 618 ntBASIC5.41□□□□□ -1.54
HDAC4P56524 AC016957.2-201ENST00000616998 848 ntBASIC5.41□□□□□ -1.54
HDAC4P56524 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC5.41□□□□□ -1.54
HDAC4P56524 AP000943.4-201ENST00000622912 357 ntBASIC5.41□□□□□ -1.54
HDAC4P56524 AC135068.12-201ENST00000637370 931 ntBASIC5.41□□□□□ -1.54
HDAC4P56524 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.41□□□□□ -1.54
HDAC4P56524 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HDAC4P56524 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HDAC4P56524 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HDAC4P56524 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
HDAC4P56524 HSPA8P17-201ENST00000427029 1382 ntBASIC5.41□□□□□ -1.54
HDAC4P56524 AC093775.1-201ENST00000624154 1868 ntBASIC5.41□□□□□ -1.54
HDAC4P56524 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.4□□□□□ -1.54
HDAC4P56524 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
HDAC4P56524 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
HDAC4P56524 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC5.4□□□□□ -1.54
HDAC4P56524 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
HDAC4P56524 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
HDAC4P56524 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
HDAC4P56524 PANDAR-201ENST00000629595 1506 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 PABPC1P6-201ENST00000445594 1829 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.54
HDAC4P56524 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
HDAC4P56524 RNU1-43P-201ENST00000365052 165 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 RNA5SP223-201ENST00000365174 120 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC5.4□□□□□ -1.54
HDAC4P56524 RNU6-171P-201ENST00000384354 107 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
HDAC4P56524 ATP5F1P6-201ENST00000402768 767 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 RSL24D1P1-201ENST00000404972 493 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 DUTP5-201ENST00000406790 469 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 SPTLC1P2-201ENST00000407089 121 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 RN7SKP216-201ENST00000411050 312 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC5.4□□□□□ -1.54
HDAC4P56524 RPS26P13-201ENST00000419030 330 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 AC092570.3-201ENST00000420113 693 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
HDAC4P56524 OR6K4P-201ENST00000423179 955 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.4□□□□□ -1.54
HDAC4P56524 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC5.4□□□□□ -1.54
HDAC4P56524 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC5.4□□□□□ -1.54
HDAC4P56524 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC5.4□□□□□ -1.54
HDAC4P56524 FCF1P6-201ENST00000456841 595 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC5.4□□□□□ -1.54
HDAC4P56524 AL049874.2-201ENST00000492636 288 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 SUMO1P1-201ENST00000497904 306 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 GTF2F2P1-201ENST00000511083 675 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
HDAC4P56524 RNU6-415P-201ENST00000516252 97 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC5.4□□□□□ -1.54
HDAC4P56524 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC5.4□□□□□ -1.54
HDAC4P56524 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.4□□□□□ -1.54
HDAC4P56524 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC5.4□□□□□ -1.54
HDAC4P56524 AC024940.3-201ENST00000538551 316 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
HDAC4P56524 AL512310.9-201ENST00000553311 948 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
HDAC4P56524 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC5.4□□□□□ -1.54
HDAC4P56524 AC044860.2-201ENST00000561005 179 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 CD24P2-201ENST00000565486 219 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 AC021483.2-201ENST00000567415 758 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.4□□□□□ -1.54
HDAC4P56524 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC5.4□□□□□ -1.54
HDAC4P56524 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC5.4□□□□□ -1.54
HDAC4P56524 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.4□□□□□ -1.54
HDAC4P56524 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC5.4□□□□□ -1.54
HDAC4P56524 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
HDAC4P56524 AC008115.4-201ENST00000619780 775 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 AC009269.6-201ENST00000621778 588 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 AC090617.9-201ENST00000623751 147 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.4□□□□□ -1.54
HDAC4P56524 CASC19-222ENST00000641321 1173 ntBASIC5.4□□□□□ -1.54
HDAC4P56524 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC5.4□□□□□ -1.55
HDAC4P56524 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.4□□□□□ -1.55
HDAC4P56524 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HDAC4P56524 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
HDAC4P56524 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
HDAC4P56524 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.4□□□□□ -1.55
HDAC4P56524 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HDAC4P56524 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
HDAC4P56524 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
HDAC4P56524 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.39□□□□□ -1.55
HDAC4P56524 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC5.39□□□□□ -1.55
HDAC4P56524 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms