Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL079307.1-201ENST00000553312 5982 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A3P12111 SLC30A8-205ENST00000519688 5242 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A3P12111 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A3P12111 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC4.55□□□□□ -1.68
COL6A3P12111 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A3P12111 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A3P12111 FAM186A-204ENST00000543111 8200 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
COL6A3P12111 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC4.55□□□□□ -1.68
COL6A3P12111 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC4.55□□□□□ -1.68
COL6A3P12111 HIGD1AP18-201ENST00000520730 278 ntBASIC4.55□□□□□ -1.68
COL6A3P12111 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC4.55□□□□□ -1.68
COL6A3P12111 AGGF1P9-201ENST00000561884 913 ntBASIC4.55□□□□□ -1.68
COL6A3P12111 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC4.55□□□□□ -1.68
COL6A3P12111 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC4.55□□□□□ -1.68
COL6A3P12111 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A3P12111 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A3P12111 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC4.55□□□□□ -1.68
COL6A3P12111 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A3P12111 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
COL6A3P12111 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A3P12111 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
COL6A3P12111 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A3P12111 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
COL6A3P12111 MTCO1P12-201ENST00000414273 1543 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC4.54□□□□□ -1.68
COL6A3P12111 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A3P12111 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC4.54□□□□□ -1.68
COL6A3P12111 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A3P12111 AC108032.1-201ENST00000416706 207 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.54□□□□□ -1.68
COL6A3P12111 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.54□□□□□ -1.68
COL6A3P12111 AC104651.2-201ENST00000447549 528 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 AC090804.1-201ENST00000448870 490 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 RNA5SP246-201ENST00000458909 119 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.54□□□□□ -1.68
COL6A3P12111 AC118465.1-201ENST00000513820 1271 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 AC099522.1-202ENST00000514718 367 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.54□□□□□ -1.68
COL6A3P12111 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
COL6A3P12111 URB1-201ENST00000382751 10832 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A3P12111 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A3P12111 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.54□□□□□ -1.68
COL6A3P12111 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A3P12111 NBPF9-202ENST00000584027 5034 ntAPPRIS P2 TSL 5 BASIC4.54□□□□□ -1.68
COL6A3P12111 DDX52-213ENST00000617633 6362 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A3P12111 AL672167.1-203ENST00000641299 2975 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 EIF3EP2-201ENST00000423042 1814 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC4.54□□□□□ -1.68
COL6A3P12111 TIAM2-208ENST00000461783 6981 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
COL6A3P12111 MIR30B-201ENST00000384850 88 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 RNA5SP293-201ENST00000410527 113 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC4.54□□□□□ -1.68
COL6A3P12111 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.54□□□□□ -1.68
COL6A3P12111 RPS20P4-201ENST00000461659 355 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 IGBP1P4-201ENST00000503202 879 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC4.54□□□□□ -1.68
COL6A3P12111 AC120057.2-201ENST00000571520 271 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 AL021997.2-201ENST00000615674 271 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 AC093671.1-201ENST00000624981 2929 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A3P12111 PRDM2-203ENST00000343137 5797 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A3P12111 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.54□□□□□ -1.68
COL6A3P12111 AL117378.2-201ENST00000622916 1337 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 TNFRSF9-204ENST00000615230 5970 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
COL6A3P12111 AL672167.1-205ENST00000641112 3080 ntBASIC4.54□□□□□ -1.68
COL6A3P12111 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL6A3P12111 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
COL6A3P12111 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
COL6A3P12111 NLGN4Y-203ENST00000382868 5338 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A3P12111 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A3P12111 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A3P12111 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A3P12111 RNU1-14P-201ENST00000362759 152 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 RN7SKP16-201ENST00000410180 299 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 AL158156.1-201ENST00000422509 473 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 AL157831.1-201ENST00000426134 473 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.53□□□□□ -1.68
COL6A3P12111 AC008155.2-201ENST00000464337 397 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 RN7SKP141-201ENST00000516167 338 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 FP236240.3-201ENST00000623061 327 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 AC110801.1-201ENST00000623590 212 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 CPHL1P-201ENST00000461341 3407 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 THSD7B-201ENST00000272643 5939 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
COL6A3P12111 DOCK8-205ENST00000453981 7237 ntTSL 5 BASIC4.53□□□□□ -1.68
COL6A3P12111 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A3P12111 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC4.53□□□□□ -1.68
COL6A3P12111 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A3P12111 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
COL6A3P12111 SNORA70H-201ENST00000383910 135 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 SNORA57.3-201ENST00000411095 141 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.53□□□□□ -1.68
COL6A3P12111 MIR6891-201ENST00000618788 93 ntBASIC4.53□□□□□ -1.68
COL6A3P12111 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A3P12111 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.53□□□□□ -1.68
COL6A3P12111 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.53□□□□□ -1.68
COL6A3P12111 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A3P12111 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A3P12111 NLGN4X-204ENST00000381095 5870 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL6A3P12111 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms