Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC5.15□□□□□ -1.59
HOXA3O43365 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.15□□□□□ -1.59
HOXA3O43365 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC5.15□□□□□ -1.59
HOXA3O43365 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC5.15□□□□□ -1.59
HOXA3O43365 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
HOXA3O43365 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.15□□□□□ -1.59
HOXA3O43365 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC5.15□□□□□ -1.59
HOXA3O43365 AL133351.3-201ENST00000454998 193 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC5.15□□□□□ -1.59
HOXA3O43365 AC068228.1-201ENST00000461723 211 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC5.15□□□□□ -1.59
HOXA3O43365 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.59
HOXA3O43365 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC5.15□□□□□ -1.59
HOXA3O43365 AC090013.1-201ENST00000485147 480 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 HMGN2P25-201ENST00000486956 268 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 RPS27P23-201ENST00000487608 251 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 RN7SL561P-201ENST00000488553 281 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HOXA3O43365 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC5.15□□□□□ -1.59
HOXA3O43365 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC5.15□□□□□ -1.59
HOXA3O43365 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC5.15□□□□□ -1.59
HOXA3O43365 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC5.15□□□□□ -1.59
HOXA3O43365 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC5.15□□□□□ -1.59
HOXA3O43365 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC5.15□□□□□ -1.59
HOXA3O43365 FAU-203ENST00000525297 355 ntTSL 5 BASIC5.15□□□□□ -1.59
HOXA3O43365 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC5.15□□□□□ -1.59
HOXA3O43365 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.15□□□□□ -1.59
HOXA3O43365 TRIM51DP-201ENST00000529746 596 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC5.15□□□□□ -1.59
HOXA3O43365 AC137768.1-201ENST00000549998 553 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 NTS-203ENST00000551529 801 ntTSL 3 BASIC5.15□□□□□ -1.59
HOXA3O43365 AC004217.3-201ENST00000551552 878 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.59
HOXA3O43365 TRAV15-201ENST00000556680 249 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 ZNF519P3-201ENST00000557158 1032 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 NPM1P47-201ENST00000560843 856 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC5.15□□□□□ -1.59
HOXA3O43365 MIR4528-201ENST00000577763 90 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 MIR5095-201ENST00000578844 88 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 AC090616.1-201ENST00000583895 447 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC5.15□□□□□ -1.59
HOXA3O43365 AC092650.2-201ENST00000619984 902 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
HOXA3O43365 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
HOXA3O43365 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HOXA3O43365 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.15□□□□□ -1.59
HOXA3O43365 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
HOXA3O43365 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
HOXA3O43365 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC5.15□□□□□ -1.59
HOXA3O43365 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
HOXA3O43365 AC034229.2-201ENST00000566945 2508 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 DDX18P4-201ENST00000511690 1966 ntBASIC5.15□□□□□ -1.59
HOXA3O43365 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.14□□□□□ -1.59
HOXA3O43365 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 AL591848.4-201ENST00000567832 3472 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 CDR1-202ENST00000625883 1485 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
HOXA3O43365 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
HOXA3O43365 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.14□□□□□ -1.59
HOXA3O43365 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC5.14□□□□□ -1.59
HOXA3O43365 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 COX6B1P3-201ENST00000312310 260 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 SNORD16-201ENST00000362803 99 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 RN7SKP275-201ENST00000364626 301 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 RNU5E-4P-201ENST00000364931 120 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 SUGT1P1-201ENST00000379514 476 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 RNU1-46P-201ENST00000384425 164 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 AC092642.1-201ENST00000392417 425 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 SMARCE1P6-201ENST00000398372 1216 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 METTL5-204ENST00000409340 472 ntTSL 5 BASIC5.14□□□□□ -1.59
HOXA3O43365 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC5.14□□□□□ -1.59
HOXA3O43365 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXA3O43365 AC092647.1-201ENST00000420654 287 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXA3O43365 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXA3O43365 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.14□□□□□ -1.59
HOXA3O43365 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5.14□□□□□ -1.59
HOXA3O43365 AL365184.2-201ENST00000431139 435 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 AC094019.1-201ENST00000434678 472 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXA3O43365 MRPS21P3-201ENST00000436696 262 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXA3O43365 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXA3O43365 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXA3O43365 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXA3O43365 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC5.14□□□□□ -1.59
HOXA3O43365 AC015724.1-201ENST00000478577 156 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 AC063943.2-201ENST00000495697 534 ntBASIC5.14□□□□□ -1.59
HOXA3O43365 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC5.14□□□□□ -1.59
HOXA3O43365 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC5.14□□□□□ -1.59
HOXA3O43365 HMGB1P44-201ENST00000508597 572 ntBASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms