Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 AC069157.1-201ENST00000421749 137 ntBASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 AL136231.1-201ENST00000429407 730 ntBASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 AL358232.1-201ENST00000448030 501 ntBASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 AL162591.2-201ENST00000449634 317 ntBASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 RN7SL98P-201ENST00000462271 300 ntBASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 AC099676.1-201ENST00000608886 657 ntBASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 MIR6867-201ENST00000610636 67 ntBASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 CYP1D1P-201ENST00000416662 1433 ntBASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 ZNF137P-201ENST00000456718 1920 ntBASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 AC039056.2-201ENST00000622261 511 ntBASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
CCDC88AQ3V6T2 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 SNORA11.2-201ENST00000408318 127 ntBASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 BX119904.3-201ENST00000428194 957 ntBASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 AC041039.1-201ENST00000485656 536 ntBASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 TPT1P3-201ENST00000492841 512 ntBASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 AC091979.2-201ENST00000607514 214 ntBASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 ZYXP1-201ENST00000617638 118 ntBASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 AC090506.2-201ENST00000624521 419 ntBASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 AC022417.1-201ENST00000624768 1303 ntBASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 AL583835.1-201ENST00000399570 407 ntBASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 NPM1P37-201ENST00000403105 874 ntBASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 COX6CP15-201ENST00000426313 211 ntBASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 RPS12P10-201ENST00000427031 377 ntBASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 RNA5SP230-201ENST00000517039 122 ntBASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 AL121932.1-201ENST00000605542 214 ntBASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 CASC19-206ENST00000641028 1430 ntBASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC88AQ3V6T2 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 RPL23AP26-201ENST00000412728 464 ntBASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 TMBIM7P-201ENST00000418074 855 ntBASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 NFYAP1-201ENST00000431953 972 ntBASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 AC092162.1-201ENST00000432828 434 ntBASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 RPL36AP41-201ENST00000493820 306 ntBASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 AC010547.7-201ENST00000570323 333 ntBASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 AC012442.3-202ENST00000636742 206 ntBASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms