Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
RNF4P78317 AC074141.1-201ENST00000588129 2995 ntBASIC6.07□□□□□ -1.44
RNF4P78317 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
RNF4P78317 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
RNF4P78317 AL022323.4-201ENST00000623980 13120 ntBASIC6.07□□□□□ -1.44
RNF4P78317 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
RNF4P78317 OR2M1P-201ENST00000318104 951 ntBASIC6.07□□□□□ -1.44
RNF4P78317 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
RNF4P78317 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
RNF4P78317 RNU6-492P-201ENST00000363035 104 ntBASIC6.07□□□□□ -1.44
RNF4P78317 SNORA64.3-201ENST00000365647 134 ntBASIC6.07□□□□□ -1.44
RNF4P78317 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
RNF4P78317 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC6.07□□□□□ -1.44
RNF4P78317 RNU6-723P-201ENST00000383973 107 ntBASIC6.07□□□□□ -1.44
RNF4P78317 RNU1-46P-201ENST00000384425 164 ntBASIC6.07□□□□□ -1.44
RNF4P78317 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
RNF4P78317 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
RNF4P78317 TMSB4XP8-201ENST00000402089 135 ntBASIC6.07□□□□□ -1.44
RNF4P78317 RPL5P20-201ENST00000403848 896 ntBASIC6.07□□□□□ -1.44
RNF4P78317 RN7SKP221-201ENST00000410420 301 ntBASIC6.07□□□□□ -1.44
RNF4P78317 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC6.07□□□□□ -1.44
RNF4P78317 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC6.07□□□□□ -1.44
RNF4P78317 TMSB4XP6-201ENST00000415187 135 ntBASIC6.07□□□□□ -1.44
RNF4P78317 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
RNF4P78317 MRPS21P5-201ENST00000417885 231 ntBASIC6.07□□□□□ -1.44
RNF4P78317 BOLA3P4-201ENST00000418151 400 ntBASIC6.07□□□□□ -1.44
RNF4P78317 AIMP1P1-201ENST00000418670 937 ntBASIC6.07□□□□□ -1.44
RNF4P78317 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC6.07□□□□□ -1.44
RNF4P78317 AC062016.2-201ENST00000420950 676 ntBASIC6.07□□□□□ -1.44
RNF4P78317 TMSB4XP1-201ENST00000424567 135 ntBASIC6.07□□□□□ -1.44
RNF4P78317 RPL7P4-203ENST00000430239 730 ntBASIC6.07□□□□□ -1.44
RNF4P78317 AC092809.1-201ENST00000441469 474 ntBASIC6.07□□□□□ -1.44
RNF4P78317 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC6.07□□□□□ -1.44
RNF4P78317 REG1CP-206ENST00000447469 496 ntBASIC6.07□□□□□ -1.44
RNF4P78317 MTND5P20-201ENST00000448677 143 ntBASIC6.07□□□□□ -1.44
RNF4P78317 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC6.07□□□□□ -1.44
RNF4P78317 SNORD42A-201ENST00000459584 64 ntBASIC6.07□□□□□ -1.44
RNF4P78317 RPS7P10-201ENST00000464254 603 ntBASIC6.07□□□□□ -1.44
RNF4P78317 AC146507.1-201ENST00000468335 354 ntBASIC6.07□□□□□ -1.44
RNF4P78317 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC6.07□□□□□ -1.44
RNF4P78317 AC044810.1-201ENST00000480271 711 ntBASIC6.07□□□□□ -1.44
RNF4P78317 RPS27P23-201ENST00000487608 251 ntBASIC6.07□□□□□ -1.44
RNF4P78317 PDLIM1P4-201ENST00000504327 1006 ntBASIC6.07□□□□□ -1.44
RNF4P78317 HMGB1P28-201ENST00000507778 552 ntBASIC6.07□□□□□ -1.44
RNF4P78317 MTCO1P30-201ENST00000515244 580 ntBASIC6.07□□□□□ -1.44
RNF4P78317 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC6.07□□□□□ -1.44
RNF4P78317 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC6.07□□□□□ -1.44
RNF4P78317 OR8Q1P-201ENST00000526467 655 ntBASIC6.07□□□□□ -1.44
RNF4P78317 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC6.07□□□□□ -1.44
RNF4P78317 AP001646.1-201ENST00000527936 915 ntBASIC6.07□□□□□ -1.44
RNF4P78317 SLC2A13P1-201ENST00000531560 322 ntBASIC6.07□□□□□ -1.44
RNF4P78317 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC6.07□□□□□ -1.44
RNF4P78317 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
RNF4P78317 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC6.07□□□□□ -1.44
RNF4P78317 TRAV15-201ENST00000556680 249 ntBASIC6.07□□□□□ -1.44
RNF4P78317 AC006960.3-201ENST00000561845 705 ntBASIC6.07□□□□□ -1.44
RNF4P78317 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC6.07□□□□□ -1.44
RNF4P78317 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC6.07□□□□□ -1.44
RNF4P78317 MIR3913-1-201ENST00000577744 102 ntBASIC6.07□□□□□ -1.44
RNF4P78317 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC6.07□□□□□ -1.44
RNF4P78317 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC6.07□□□□□ -1.44
RNF4P78317 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC6.07□□□□□ -1.44
RNF4P78317 AC004805.3-201ENST00000603178 310 ntBASIC6.07□□□□□ -1.44
RNF4P78317 AL137072.1-201ENST00000603444 466 ntBASIC6.07□□□□□ -1.44
RNF4P78317 AL157899.1-201ENST00000604110 936 ntBASIC6.07□□□□□ -1.44
RNF4P78317 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC6.07□□□□□ -1.44
RNF4P78317 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC6.07□□□□□ -1.44
RNF4P78317 AC012254.5-201ENST00000623573 478 ntBASIC6.07□□□□□ -1.44
RNF4P78317 FAM157B-203ENST00000639350 358 ntBASIC6.07□□□□□ -1.44
RNF4P78317 RNF6P1-201ENST00000444889 1784 ntBASIC6.07□□□□□ -1.44
RNF4P78317 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
RNF4P78317 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
RNF4P78317 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
RNF4P78317 CTNNA1P1-201ENST00000515849 2728 ntBASIC6.07□□□□□ -1.44
RNF4P78317 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC6.07□□□□□ -1.44
RNF4P78317 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
RNF4P78317 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
RNF4P78317 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
RNF4P78317 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
RNF4P78317 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.07□□□□□ -1.44
RNF4P78317 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
RNF4P78317 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
RNF4P78317 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.07□□□□□ -1.44
RNF4P78317 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
RNF4P78317 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
RNF4P78317 ZNF37BP-203ENST00000452306 1352 ntBASIC6.06□□□□□ -1.44
RNF4P78317 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.06□□□□□ -1.44
RNF4P78317 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
RNF4P78317 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
RNF4P78317 AC009120.2-204ENST00000621548 2032 ntBASIC6.06□□□□□ -1.44
RNF4P78317 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
RNF4P78317 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
RNF4P78317 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
RNF4P78317 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC6.06□□□□□ -1.44
RNF4P78317 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.06□□□□□ -1.44
RNF4P78317 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.06□□□□□ -1.44
RNF4P78317 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
RNF4P78317 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
RNF4P78317 SNORA72.1-201ENST00000363485 129 ntBASIC6.06□□□□□ -1.44
RNF4P78317 RNU1-84P-201ENST00000365447 164 ntBASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 166.6 ms