Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC6.62□□□□□ -1.35
LIG3P49916 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC6.62□□□□□ -1.35
LIG3P49916 DNAJB5P1-201ENST00000454004 806 ntBASIC6.62□□□□□ -1.35
LIG3P49916 RPS4XP15-201ENST00000489210 795 ntBASIC6.62□□□□□ -1.35
LIG3P49916 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC6.62□□□□□ -1.35
LIG3P49916 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC6.62□□□□□ -1.35
LIG3P49916 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC6.62□□□□□ -1.35
LIG3P49916 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC6.62□□□□□ -1.35
LIG3P49916 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
LIG3P49916 AC093664.1-201ENST00000511779 289 ntBASIC6.62□□□□□ -1.35
LIG3P49916 NPM1P6-201ENST00000521088 871 ntBASIC6.62□□□□□ -1.35
LIG3P49916 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC6.62□□□□□ -1.35
LIG3P49916 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC6.62□□□□□ -1.35
LIG3P49916 NTS-203ENST00000551529 801 ntTSL 3 BASIC6.62□□□□□ -1.35
LIG3P49916 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC6.62□□□□□ -1.35
LIG3P49916 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC6.62□□□□□ -1.35
LIG3P49916 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC6.62□□□□□ -1.35
LIG3P49916 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC6.62□□□□□ -1.35
LIG3P49916 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC6.62□□□□□ -1.35
LIG3P49916 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC6.62□□□□□ -1.35
LIG3P49916 AC108673.3-201ENST00000609183 335 ntBASIC6.62□□□□□ -1.35
LIG3P49916 AC005332.6-201ENST00000613178 446 ntBASIC6.62□□□□□ -1.35
LIG3P49916 AC023509.5-201ENST00000617434 807 ntBASIC6.62□□□□□ -1.35
LIG3P49916 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC6.62□□□□□ -1.35
LIG3P49916 AC016717.3-201ENST00000624730 554 ntBASIC6.62□□□□□ -1.35
LIG3P49916 AC073488.9-201ENST00000631601 754 ntBASIC6.62□□□□□ -1.35
LIG3P49916 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
LIG3P49916 AL359976.1-201ENST00000418655 3528 ntBASIC6.62□□□□□ -1.35
LIG3P49916 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
LIG3P49916 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
LIG3P49916 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
LIG3P49916 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
LIG3P49916 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.62□□□□□ -1.35
LIG3P49916 AL079343.1-201ENST00000572358 1771 ntBASIC6.62□□□□□ -1.35
LIG3P49916 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC6.62□□□□□ -1.35
LIG3P49916 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
LIG3P49916 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
LIG3P49916 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC6.61□□□□□ -1.35
LIG3P49916 AC012078.1-201ENST00000405035 1646 ntBASIC6.61□□□□□ -1.35
LIG3P49916 USP46-202ENST00000451218 4622 ntTSL 5 BASIC6.61□□□□□ -1.35
LIG3P49916 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
LIG3P49916 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
LIG3P49916 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC6.61□□□□□ -1.35
LIG3P49916 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC6.61□□□□□ -1.35
LIG3P49916 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC6.61□□□□□ -1.35
LIG3P49916 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC6.61□□□□□ -1.35
LIG3P49916 RNU6-1066P-201ENST00000363573 105 ntBASIC6.61□□□□□ -1.35
LIG3P49916 ESD-201ENST00000378697 1079 ntTSL 5 BASIC6.61□□□□□ -1.35
LIG3P49916 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC6.61□□□□□ -1.35
LIG3P49916 RPL23AP17-201ENST00000401064 499 ntBASIC6.61□□□□□ -1.35
LIG3P49916 VIM2P-201ENST00000402383 1294 ntBASIC6.61□□□□□ -1.35
LIG3P49916 MIR1284-201ENST00000408337 120 ntBASIC6.61□□□□□ -1.35
LIG3P49916 ATG4AP1-201ENST00000416893 538 ntBASIC6.61□□□□□ -1.35
LIG3P49916 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC6.61□□□□□ -1.35
LIG3P49916 AL596276.1-201ENST00000434465 418 ntBASIC6.61□□□□□ -1.35
LIG3P49916 AL512286.1-201ENST00000439244 400 ntBASIC6.61□□□□□ -1.35
LIG3P49916 AC093392.2-201ENST00000450682 337 ntBASIC6.61□□□□□ -1.35
LIG3P49916 AL358876.1-201ENST00000453364 1075 ntBASIC6.61□□□□□ -1.35
LIG3P49916 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC6.61□□□□□ -1.35
LIG3P49916 RPS7P10-201ENST00000464254 603 ntBASIC6.61□□□□□ -1.35
LIG3P49916 AC005165.2-201ENST00000466070 380 ntBASIC6.61□□□□□ -1.35
LIG3P49916 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC6.61□□□□□ -1.35
LIG3P49916 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC6.61□□□□□ -1.35
LIG3P49916 AC091874.2-201ENST00000505889 720 ntBASIC6.61□□□□□ -1.35
LIG3P49916 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC6.61□□□□□ -1.35
LIG3P49916 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC6.61□□□□□ -1.35
LIG3P49916 AC048346.1-201ENST00000510247 144 ntBASIC6.61□□□□□ -1.35
LIG3P49916 RNA5SP135-201ENST00000517019 125 ntBASIC6.61□□□□□ -1.35
LIG3P49916 AC116917.1-201ENST00000520558 305 ntBASIC6.61□□□□□ -1.35
LIG3P49916 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
LIG3P49916 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
LIG3P49916 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC6.61□□□□□ -1.35
LIG3P49916 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC6.61□□□□□ -1.35
LIG3P49916 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC6.61□□□□□ -1.35
LIG3P49916 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC6.61□□□□□ -1.35
LIG3P49916 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC6.61□□□□□ -1.35
LIG3P49916 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC6.61□□□□□ -1.35
LIG3P49916 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC6.61□□□□□ -1.35
LIG3P49916 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC6.61□□□□□ -1.35
LIG3P49916 AC024560.3-201ENST00000608482 349 ntBASIC6.61□□□□□ -1.35
LIG3P49916 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
LIG3P49916 AL589743.7-201ENST00000612637 233 ntBASIC6.61□□□□□ -1.35
LIG3P49916 OR8G7P-201ENST00000616658 848 ntBASIC6.61□□□□□ -1.35
LIG3P49916 REV3L-214ENST00000619481 969 ntTSL 5 BASIC6.61□□□□□ -1.35
LIG3P49916 UBA3-213ENST00000631029 123 ntTSL 5 BASIC6.61□□□□□ -1.35
LIG3P49916 AC000095.2-202ENST00000637415 154 ntBASIC6.61□□□□□ -1.35
LIG3P49916 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
LIG3P49916 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
LIG3P49916 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
LIG3P49916 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
LIG3P49916 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC6.61□□□□□ -1.35
LIG3P49916 AC109446.4-201ENST00000623235 2755 ntBASIC6.61□□□□□ -1.35
LIG3P49916 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC6.61□□□□□ -1.35
LIG3P49916 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC6.61□□□□□ -1.35
LIG3P49916 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.61□□□□□ -1.35
LIG3P49916 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
LIG3P49916 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
LIG3P49916 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
LIG3P49916 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC6.6□□□□□ -1.35
LIG3P49916 AC068870.3-201ENST00000625077 2536 ntBASIC6.6□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms