Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 NLN-202ENST00000502464 8354 ntTSL 5 BASIC4.57□□□□□ -1.68
COL6A3P12111 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
COL6A3P12111 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
COL6A3P12111 RNA5SP223-201ENST00000365174 120 ntBASIC4.57□□□□□ -1.68
COL6A3P12111 AL391219.1-201ENST00000422570 483 ntBASIC4.57□□□□□ -1.68
COL6A3P12111 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.57□□□□□ -1.68
COL6A3P12111 RNU6-237P-201ENST00000515985 71 ntBASIC4.57□□□□□ -1.68
COL6A3P12111 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.57□□□□□ -1.68
COL6A3P12111 AC093249.4-201ENST00000564755 259 ntBASIC4.57□□□□□ -1.68
COL6A3P12111 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
COL6A3P12111 FRY-207ENST00000542859 13200 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
COL6A3P12111 AP001642.1-201ENST00000624727 2117 ntBASIC4.57□□□□□ -1.68
COL6A3P12111 LTBP1-204ENST00000407925 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL6A3P12111 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL6A3P12111 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL6A3P12111 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
COL6A3P12111 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL6A3P12111 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL6A3P12111 ATMIN-206ENST00000566488 5343 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL6A3P12111 AC007620.2-201ENST00000600539 1697 ntTSL 5 BASIC4.57□□□□□ -1.68
COL6A3P12111 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL6A3P12111 ZDHHC20P2-201ENST00000424108 429 ntBASIC4.57□□□□□ -1.68
COL6A3P12111 NPM1P26-201ENST00000426339 738 ntBASIC4.57□□□□□ -1.68
COL6A3P12111 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.57□□□□□ -1.68
COL6A3P12111 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.57□□□□□ -1.68
COL6A3P12111 AC113403.1-201ENST00000604910 193 ntBASIC4.57□□□□□ -1.68
COL6A3P12111 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC4.57□□□□□ -1.68
COL6A3P12111 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.57□□□□□ -1.68
COL6A3P12111 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 MAP1B-201ENST00000296755 12036 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 SPATS2L-227ENST00000619961 6115 ntTSL 2 BASIC4.56□□□□□ -1.68
COL6A3P12111 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC4.56□□□□□ -1.68
COL6A3P12111 AL592156.1-201ENST00000508758 304 ntBASIC4.56□□□□□ -1.68
COL6A3P12111 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.56□□□□□ -1.68
COL6A3P12111 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.56□□□□□ -1.68
COL6A3P12111 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC4.56□□□□□ -1.68
COL6A3P12111 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
COL6A3P12111 MEF2C-209ENST00000504921 7561 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
COL6A3P12111 PRO1804-201ENST00000623780 2050 ntBASIC4.56□□□□□ -1.68
COL6A3P12111 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 NACA-203ENST00000454682 6629 ntTSL 5 BASIC4.56□□□□□ -1.68
COL6A3P12111 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.56□□□□□ -1.68
COL6A3P12111 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.56□□□□□ -1.68
COL6A3P12111 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC4.56□□□□□ -1.68
COL6A3P12111 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 RNA5SP126-201ENST00000365092 109 ntBASIC4.56□□□□□ -1.68
COL6A3P12111 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.56□□□□□ -1.68
COL6A3P12111 ABCC13-202ENST00000463099 3842 ntBASIC4.56□□□□□ -1.68
COL6A3P12111 RN7SL271P-201ENST00000487601 295 ntBASIC4.56□□□□□ -1.68
COL6A3P12111 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.56□□□□□ -1.68
COL6A3P12111 YPEL5P2-201ENST00000605553 359 ntBASIC4.56□□□□□ -1.68
COL6A3P12111 AL713922.2-201ENST00000619384 716 ntBASIC4.56□□□□□ -1.68
COL6A3P12111 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
COL6A3P12111 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A3P12111 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC4.56□□□□□ -1.68
COL6A3P12111 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A3P12111 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A3P12111 SNORA70J-201ENST00000384182 135 ntBASIC4.55□□□□□ -1.68
COL6A3P12111 PTP4A1P3-201ENST00000433661 420 ntBASIC4.55□□□□□ -1.68
COL6A3P12111 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A3P12111 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.55□□□□□ -1.68
COL6A3P12111 AC004924.1-201ENST00000480160 781 ntBASIC4.55□□□□□ -1.68
COL6A3P12111 RPS4XP15-201ENST00000489210 795 ntBASIC4.55□□□□□ -1.68
COL6A3P12111 RN7SL323P-201ENST00000494712 295 ntBASIC4.55□□□□□ -1.68
COL6A3P12111 RNA5SP519-201ENST00000516480 119 ntBASIC4.55□□□□□ -1.68
COL6A3P12111 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.55□□□□□ -1.68
COL6A3P12111 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.55□□□□□ -1.68
COL6A3P12111 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.55□□□□□ -1.68
COL6A3P12111 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC4.55□□□□□ -1.68
COL6A3P12111 GON4L-218ENST00000620426 5506 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A3P12111 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A3P12111 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A3P12111 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.55□□□□□ -1.68
COL6A3P12111 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A3P12111 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A3P12111 AC090142.1-201ENST00000465776 462 ntBASIC4.55□□□□□ -1.68
COL6A3P12111 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.55□□□□□ -1.68
COL6A3P12111 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.55□□□□□ -1.68
COL6A3P12111 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.55□□□□□ -1.68
COL6A3P12111 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.55□□□□□ -1.68
COL6A3P12111 ADAD1P2-201ENST00000588476 646 ntBASIC4.55□□□□□ -1.68
COL6A3P12111 AC006453.5-201ENST00000636451 619 ntBASIC4.55□□□□□ -1.68
COL6A3P12111 AC004158.1-201ENST00000564508 4319 ntBASIC4.55□□□□□ -1.68
COL6A3P12111 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC4.55□□□□□ -1.68
COL6A3P12111 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms