Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXD4P09016 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXD4P09016 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HOXD4P09016 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
HOXD4P09016 AC107021.2-201ENST00000567714 2095 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXD4P09016 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
HOXD4P09016 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXD4P09016 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC4.6□□□□□ -1.67
HOXD4P09016 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXD4P09016 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXD4P09016 OR9G4-201ENST00000302957 984 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HOXD4P09016 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXD4P09016 AL672167.2-201ENST00000377164 879 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 FABP12P1-201ENST00000401911 322 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HOXD4P09016 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXD4P09016 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HOXD4P09016 AC007064.3-201ENST00000422608 359 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 OR5M12P-201ENST00000423388 929 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HOXD4P09016 ARAFP2-201ENST00000440565 559 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 ZNF736P11Y-201ENST00000442535 1213 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 ZNF736P12Y-201ENST00000443152 1243 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 AL031584.1-201ENST00000447169 754 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC4.6□□□□□ -1.67
HOXD4P09016 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXD4P09016 ZNF736P4Y-201ENST00000454995 1243 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 EIF2S2P5-201ENST00000457635 968 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 FTH1P2-201ENST00000466086 412 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 RPS12P31-201ENST00000491419 398 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 HMGB3P16-201ENST00000508037 287 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 HMGN1P9-201ENST00000515212 298 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXD4P09016 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXD4P09016 AC134698.5-201ENST00000519444 336 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 EIF4A2P3-201ENST00000525903 1055 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 AP001804.2-201ENST00000533932 910 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXD4P09016 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC4.6□□□□□ -1.67
HOXD4P09016 AC090079.2-201ENST00000575289 768 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 RN7SL176P-201ENST00000580352 264 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
HOXD4P09016 AC007423.1-201ENST00000605009 627 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 AC015802.5-201ENST00000607478 399 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 AL159169.2-201ENST00000610061 1269 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXD4P09016 AL731566.2-201ENST00000618971 317 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXD4P09016 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
HOXD4P09016 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HOXD4P09016 OR14L1P-202ENST00000641545 3009 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 AC006210.2-201ENST00000367074 1545 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXD4P09016 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.6□□□□□ -1.67
HOXD4P09016 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXD4P09016 AL450345.1-202ENST00000605741 3881 ntBASIC4.6□□□□□ -1.67
HOXD4P09016 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXD4P09016 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HOXD4P09016 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.6□□□□□ -1.67
HOXD4P09016 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
HOXD4P09016 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
HOXD4P09016 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.6□□□□□ -1.67
HOXD4P09016 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
HOXD4P09016 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.67
HOXD4P09016 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.59□□□□□ -1.67
HOXD4P09016 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
HOXD4P09016 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXD4P09016 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HOXD4P09016 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
HOXD4P09016 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
HOXD4P09016 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
HOXD4P09016 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
HOXD4P09016 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.59□□□□□ -1.67
HOXD4P09016 RNVU1-6-201ENST00000364688 164 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 AL353625.1-202ENST00000366273 571 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
HOXD4P09016 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
HOXD4P09016 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.67
HOXD4P09016 RNU2-72P-201ENST00000411175 163 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 RPL12P9-201ENST00000412942 488 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXD4P09016 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 AL590139.1-201ENST00000416267 400 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 AC013470.3-201ENST00000420252 1194 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXD4P09016 RPS6P14-201ENST00000425165 719 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.59□□□□□ -1.67
HOXD4P09016 NDUFA5P1-201ENST00000433858 341 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 AL138878.2-201ENST00000440581 1241 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 OR7E125P-201ENST00000443450 846 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC4.59□□□□□ -1.67
HOXD4P09016 AC073587.1-201ENST00000447093 876 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 AL354714.3-201ENST00000447284 493 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 AC002553.2-201ENST00000453217 340 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.59□□□□□ -1.67
HOXD4P09016 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXD4P09016 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms