Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 Y_RNA.216-201ENST00000364205 93 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 RNU6-359P-201ENST00000365466 108 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 BTBD10P2-201ENST00000404779 676 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 RNU6-1068P-201ENST00000410958 103 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 RPS7P15-201ENST00000415804 584 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AL353678.1-201ENST00000422735 741 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 GAPDHP19-201ENST00000431768 1005 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC009237.4-201ENST00000441078 238 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 RBMY2TP-201ENST00000451162 947 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 RPS15AP1-201ENST00000457423 391 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC073594.1-201ENST00000462065 364 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC091982.1-202ENST00000473923 343 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC104563.1-201ENST00000476147 376 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 PRICKLE2-AS2-201ENST00000484703 496 ntTSL 3 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC034222.1-201ENST00000494052 532 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 GAPDHP56-201ENST00000506031 988 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC097103.2-205ENST00000515247 567 ntTSL 4 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 COX6CP8-201ENST00000522620 226 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AP003072.2-201ENST00000527756 676 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 OR5B19P-201ENST00000531766 928 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AL031846.1-201ENST00000560933 314 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC010327.2-201ENST00000587647 488 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 RPL26P30-202ENST00000602923 645 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC121334.2-201ENST00000605387 271 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC090971.5-201ENST00000621102 293 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC087894.3-201ENST00000623682 349 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 SOX6-211ENST00000528429 2656 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 MTFR2-205ENST00000451457 1524 ntAPPRIS P2 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 PPFIA2-202ENST00000407050 3903 ntTSL 2 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 LRRC2-AS1-201ENST00000599511 2291 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 MUSK-205ENST00000374448 2754 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC126773.4-201ENST00000612545 3043 ntBASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 GCNT3-209ENST00000560585 2360 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 TMEM267-202ENST00000500337 2950 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIMD1Q9UGP4 UMAD1-206ENST00000636849 2157 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 DNM1L-207ENST00000452533 4439 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 ZNF182-202ENST00000396965 3586 ntAPPRIS P4 TSL 2 BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AC006511.3-201ENST00000624929 1783 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 NPIPB9-202ENST00000550983 2123 ntAPPRIS P2 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 MTCO1P9-201ENST00000505577 1534 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 FARSB-201ENST00000281828 3369 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 STOM-201ENST00000286713 3010 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 RN7SKP171-201ENST00000364417 303 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 RPL35AP24-201ENST00000413846 330 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 RPL26P29-201ENST00000415623 438 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 RPL7AP51-201ENST00000422016 760 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 RPS26P40-201ENST00000435209 294 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AC009518.3-201ENST00000438972 253 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AC002486.2-201ENST00000447806 590 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AC108463.2-201ENST00000451230 412 ntTSL 5 BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AC099670.1-201ENST00000455141 783 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AL591122.1-201ENST00000487348 492 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 PCBP2P3-201ENST00000509726 843 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 RNA5SP401-201ENST00000515920 127 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 RN7SKP116-201ENST00000516902 319 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 RNU6-714P-201ENST00000516963 103 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AC010247.1-201ENST00000527895 759 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AC125612.1-201ENST00000547580 377 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AL162632.2-201ENST00000553933 399 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AC011500.1-201ENST00000601963 469 ntBASIC7.54□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms