Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HLA-DMBP28068 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC3.67□□□□□ -1.82
HLA-DMBP28068 MRPS33P2-201ENST00000507850 322 ntBASIC3.67□□□□□ -1.82
HLA-DMBP28068 RNA5SP392-201ENST00000516905 112 ntBASIC3.67□□□□□ -1.82
HLA-DMBP28068 RNU6-709P-201ENST00000517257 104 ntBASIC3.67□□□□□ -1.82
HLA-DMBP28068 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC3.67□□□□□ -1.82
HLA-DMBP28068 AC005000.1-201ENST00000536192 288 ntBASIC3.67□□□□□ -1.82
HLA-DMBP28068 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC3.67□□□□□ -1.82
HLA-DMBP28068 AC093249.4-201ENST00000564755 259 ntBASIC3.67□□□□□ -1.82
HLA-DMBP28068 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC3.67□□□□□ -1.82
HLA-DMBP28068 MIR4691-201ENST00000583764 85 ntBASIC3.67□□□□□ -1.82
HLA-DMBP28068 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC3.67□□□□□ -1.82
HLA-DMBP28068 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC3.67□□□□□ -1.82
HLA-DMBP28068 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC3.67□□□□□ -1.82
HLA-DMBP28068 AL137072.1-201ENST00000603444 466 ntBASIC3.67□□□□□ -1.82
HLA-DMBP28068 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC3.67□□□□□ -1.82
HLA-DMBP28068 AL049539.1-201ENST00000611964 459 ntBASIC3.67□□□□□ -1.82
HLA-DMBP28068 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC3.67□□□□□ -1.82
HLA-DMBP28068 AC091905.4-201ENST00000623432 202 ntBASIC3.67□□□□□ -1.82
HLA-DMBP28068 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC3.67□□□□□ -1.82
HLA-DMBP28068 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
HLA-DMBP28068 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HLA-DMBP28068 GHR-202ENST00000357703 4316 ntTSL 5 BASIC3.67□□□□□ -1.82
HLA-DMBP28068 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HLA-DMBP28068 AC005332.5-201ENST00000591222 2919 ntBASIC3.67□□□□□ -1.82
HLA-DMBP28068 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HLA-DMBP28068 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HLA-DMBP28068 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HLA-DMBP28068 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HLA-DMBP28068 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HLA-DMBP28068 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 RNA5SP123-201ENST00000363244 119 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC004690.1-201ENST00000418216 328 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 TDGF1P1-201ENST00000445734 527 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HLA-DMBP28068 RPL35AP28-201ENST00000459730 331 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC108751.2-201ENST00000469993 231 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 RN7SL319P-201ENST00000480656 221 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC116562.1-201ENST00000485355 781 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC110775.1-201ENST00000513721 462 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 IGHVIII-2-1-201ENST00000518843 291 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC134698.5-201ENST00000519444 336 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HLA-DMBP28068 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC018552.1-201ENST00000562099 811 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 MIR3934-201ENST00000579806 107 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 SNORA74C-1-201ENST00000580726 201 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 MEMO1P5-201ENST00000604810 406 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC116651.1-201ENST00000609724 556 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC244517.3-201ENST00000616254 1235 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC243960.7-201ENST00000623532 707 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 AP001784.1-201ENST00000624107 428 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HLA-DMBP28068 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC092435.4-201ENST00000623012 4159 ntBASIC3.66□□□□□ -1.82
HLA-DMBP28068 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HLA-DMBP28068 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HLA-DMBP28068 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HLA-DMBP28068 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HLA-DMBP28068 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC3.66□□□□□ -1.82
HLA-DMBP28068 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HLA-DMBP28068 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC3.65□□□□□ -1.82
HLA-DMBP28068 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.82
HLA-DMBP28068 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HLA-DMBP28068 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC3.65□□□□□ -1.82
HLA-DMBP28068 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC3.65□□□□□ -1.82
HLA-DMBP28068 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HLA-DMBP28068 AL445487.1-201ENST00000415694 1580 ntBASIC3.65□□□□□ -1.82
HLA-DMBP28068 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HLA-DMBP28068 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
HLA-DMBP28068 AL133268.1-201ENST00000405676 1401 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HLA-DMBP28068 OR51C1P-202ENST00000641159 1444 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HLA-DMBP28068 RNU1-83P-201ENST00000363426 164 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 RNU6-729P-201ENST00000384399 107 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 U3.35-201ENST00000408405 208 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms